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Report for CCDS24415.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24415.1 Public Mus musculus 11 Tmed4 23 108 98 CCDS HistoryNCBI Gene:103694Re-query CCDS DB by CCDS ID:24415.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 24415.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000004508.12 ENSMUSP00000004508.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000004508.12Link to Ensembl Protein Viewer:ENSMUSP00000004508.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000004508Re-query CCDS DB by Protein ID:ENSMUSP00000004508
Original member Current member NCBI NM_134020.1 NP_598781.1 Accepted alive Link to Nucleotide Sequence:NM_134020.1Link to Protein Sequence:NP_598781.1Re-query CCDS DB by Nucleotide ID:NM_134020Re-query CCDS DB by Protein ID:NP_598781Link to BLAST:NP_598781.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598781.1 227 Q8R1V4 227 100% 0 0

Chromosomal Locations for CCDS 24415.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 6271651 6271800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 6273741 6273887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 6274108 6274233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 6274398 6274498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 6274674 6274833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (684 nt):
ATGGCAGGTGTTGGGGTCGGACCGCTGCAGGGGATGGTGCGATTTGGGCTGCTGGTGCTTACTGTGTGTG
CTGCGTGTGCCCGTGGGCTCTATTTCCACATCGGCGAGACTGAGAAGCGCTGCTTCATCGAGGAAATACC
CGACGAGACCATGGTCATCGGCAACTATCGAACTCAGATGTGGGACAAACAGAAAGAGGTGTTCCTGCCG
TCGACCCCCGGCCTGGGCATGCATGTAGAGGTGAAGGACCCGGACGGCAAGGTTGTACTGTCCCGGCAAT
ACGGCTCCGAGGGCCGTTTCACGTTCACATCCCACACACCCGGTGACCATCAGATTTGTCTTCACTCCAA
CTCCACCAGAATGGCTCTCTTCGCTGGAGGCAAACTGCGTGTACACTTGGACATCCAGGTTGGAGAGCAT
GCCAACAACTACCCCGAGATCGCTGCTAAGGATAAGTTAACAGAGCTCCAGCTTCGAGCTCGCCAGTTGC
TTGACCAGGTGGAACAGATCCAGAAGGAGCAGGATTATCAGAGGTATCGTGAAGAGCGCTTCCGTCTGAC
CAGTGAGAGCACCAACCAGAGGGTCCTGTGGTGGTCCATCGCCCAGACCGTTATCCTCATCCTCACTGGC
ATCTGGCAGATGCGTCACCTCAAGAGCTTCTTTGAGGCCAAGAAGCTGGTGTAG

Translation (227 aa):
MAGVGVGPLQGMVRFGLLVLTVCAACARGLYFHIGETEKRCFIEEIPDETMVIGNYRTQMWDKQKEVFLP
STPGLGMHVEVKDPDGKVVLSRQYGSEGRFTFTSHTPGDHQICLHSNSTRMALFAGGKLRVHLDIQVGEH
ANNYPEIAAKDKLTELQLRARQLLDQVEQIQKEQDYQRYREERFRLTSESTNQRVLWWSIAQTVILILTG
IWQMRHLKSFFEAKKLV


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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