NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS23091.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23091.1 Public Mus musculus 9 Oaf 23 108 98 CCDS HistoryNCBI Gene:102644Re-query CCDS DB by CCDS ID:23091.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 23091.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034512.6 ENSMUSP00000034512.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034512.6Link to Ensembl Protein Viewer:ENSMUSP00000034512.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000034512Re-query CCDS DB by Protein ID:ENSMUSP00000034512
Original member Current member NCBI NM_178644.3 NP_848759.1 Accepted alive Link to Nucleotide Sequence:NM_178644.3Link to Protein Sequence:NP_848759.1Re-query CCDS DB by Nucleotide ID:NM_178644Re-query CCDS DB by Protein ID:NP_848759Link to BLAST:NP_848759.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_848759.1 282 Q8QZR4 282 100% 0 0

Chromosomal Locations for CCDS 23091.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 43222574 43222839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 43223897 43224077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 43224876 43225010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 43239307 43239573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (849 nt):
ATGCGGCCCCCTGGCTGCCGCGACGTCCCCTCGGCGCGCCCCGCGCTGCCGCTGCTGCTGCTGCTGCTGT
CGCCGCTGCTGCTTGGGGCGCTGCACGGCGTGGGCGCGGGCAGCGGCGCTCCGGCCGAGCTGCGGGTCCG
AGTGAGACTGCCCGACAGCCAGGTGATCGAGGAGAGTCTACAGGCGGACAGCGACGCGGACAGCATCAGC
CTTGATCTGCGCAAACCCGACGGCACTCTCATCTCCTTCATCGCGGATTTCAAGAAGGACGTGAAGATCT
TCCGAGCCCTGATCCTCGGGGAGCTGGAGAAGGGGCAGAGTCAGTTCCAGGCACTTTGCTTTGTCACAAG
GCTGCACCACAATGACATCATCCCCAGTGAGGCCATGGCCAAGCTCCGGCAGAAAAACCCCCGCGCAGTG
CGGCAGGCTGAGGAAGTGAGGGGTCTGGAACAGTTACATATGGATATCGCTGTTAACTTCAGCCAGGGGG
GCCTGCTGAGTCCCCATCTCCACAACGTATGTGCTGAGGCCACAGATGCCATCTACACCCGCCAGGAGGA
TGTCCAGTTCTGGACAGAGCGAGGTGTGGACAGTTCTGTTTTCGAGGCTCTGCCCAAGGCATTAGAACAG
GCGGAATTACCTCGTTGTGGACGAGTTGGGGATCGAGGAAAGCCCTGTACTTGCCACTACAGTCTGAGCC
TGGCCTGGTACCCATGCATGCTCAAGTATTGCCACAGTCGTGATCGGCCAGCGCCCTACAAGTGTGGCAT
CCGAAGCTGCAGGAAAAGCTACACCTTTGACTTCTATGTACCTCAGAAGCAACTGTGCCTCTGGGATGAG
GACCCCTAA

Translation (282 aa):
MRPPGCRDVPSARPALPLLLLLLSPLLLGALHGVGAGSGAPAELRVRVRLPDSQVIEESLQADSDADSIS
LDLRKPDGTLISFIADFKKDVKIFRALILGELEKGQSQFQALCFVTRLHHNDIIPSEAMAKLRQKNPRAV
RQAEEVRGLEQLHMDIAVNFSQGGLLSPHLHNVCAEATDAIYTRQEDVQFWTERGVDSSVFEALPKALEQ
AELPRCGRVGDRGKPCTCHYSLSLAWYPCMLKYCHSRDRPAPYKCGIRSCRKSYTFDFYVPQKQLCLWDE
DP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH