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Report for CCDS22944.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22944.1 Public Mus musculus 9 Snx19 23 108 98 CCDS HistoryNCBI Gene:102607Re-query CCDS DB by CCDS ID:22944.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 22944.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000164099.2 ENSMUSP00000131895.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000164099.2Link to Ensembl Protein Viewer:ENSMUSP00000131895.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000164099Re-query CCDS DB by Protein ID:ENSMUSP00000131895
Original member Current member NCBI NM_028874.2 NP_083150.1 Accepted alive Link to Nucleotide Sequence:NM_028874.2Link to Protein Sequence:NP_083150.1Re-query CCDS DB by Nucleotide ID:NM_028874Re-query CCDS DB by Protein ID:NP_083150Link to BLAST:NP_083150.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083150.1 997 Q6P4T1 997 100% 0 0

Chromosomal Locations for CCDS 22944.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 30427568 30429256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 30432235 30432373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 30433330 30433430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 30433536 30433655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 30435812 30435942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 30436775 30436871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 30437350 30437530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 30440096 30440225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 30462231 30462415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 30463220 30463307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 30464286 30464418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2994 nt):
ATGAAGGCACAAACAGTGTCCCCTACCCAGGGGACTATCTCCGAGTCCAGTTATGTCCACAGCAATCTAT
GGAGTAGCCGGAAGCTAATGATCGTGGGGGTCTTGGTGGGCTGGCTACTGGTCATCCACCTTCTGGTCAA
CATGTGGCTTCTGATCCTTCTATGTGCATCGCTGGTAGCGCTGGGAGGATGGCTGGGCTCCACTGCCATC
CTAGGGGCTTCAGGTCAATTGCACCTGGAACGATTCATTACCATCACCACCTGTCCTCCATGTCCCGAGG
CAGAAAGGCAGCTGGAACAGGAGATTAACCGCACTATCCAGATGATTATCCGAGACTTCGTGTTATCCTG
GTATCGTTCTGTGAGCCATGAGCCGGCCTTCGAGGCAGAGATGGAGGCAGCCATGAAAGGGTTGGTTCAG
GAGCTTCGAAGGCGGATGAGCATAGTGGACAGCCATGCTCTTACCCAGAGGGTTCTGACTCTCTGTGGTT
GTCACCTGCAGAGCTATATTCAGGCAAAGGAGGCTACTGCAAAGGAGCAGAGCTGTCCAGTTCAGCCCTC
CCAGCTGTGGGATGCTTACTGCCAGGTTACAGCTCCCCATCCTGCCATGAGCTGTCCCACCACGGAGGTC
ACTTATGCACGTGGCATTGTGAACTTGATACTAAAAGAGTTAGTGCCCAAGCCCCACCTGGAGACGAGGA
CTGGACGCCACGTTGTGGTTGAAGTTATTACTTGCAATGTCATCTTACCACTGATCAGCAAGCTATCAGA
TCCTGACTGGATCCACCTTATTCTTGTGAGTATCTTTTCCAAGTACAGACATGATGCAGCACAGGGAACT
AAACCCCCCTGCTCATCCAGTGTCCTAGAGCAGCCCTCGGTGCCCACATCTCTGCCATTGATTGTTGAAG
TAGAGAGTCTGCCAGTAGGAAAAGCATCTTCTCCAGCAACAGCCCCAGTACACTTGACCTCCAGTGAGCC
AGCCCCTTCCCCAGAGATTGAAGAAGGCCATGAAGCTGTAGAGGGAGATTTGCCTGGGATGCTCGAAGAA
AAAAAAGTAGGAAATAGCTCATCCCATTTTCTACAGCCAGATATCCGAGGCCCCTTGTTCTTATGTGAAG
ACTCAGAACTGGAGTCACCACTGTCTGAACTGAGCAAAGAAACCATCCTGCTAATGACCCCAGGCAACTT
CCTTTCTGACAGGATTCAAGATGCTCTGTGTGCCCTAGACGACTCCGGGGCTCTGGAGCCTAAGGATGGC
GAGGGATCTGAATGTATGGAAGGAGCAGAGGCCGAGGAGGCCCCAGGGACAGACACAGAGACAGGCATGC
TGGTCTCCGTGCTTAATTGCCCAGAGATCCAGATTGACACAGCAGACAAGGAGGTGGAGCAAGGAGATGA
CACCTCTCTTACAGCTTTGCTGGAGGAACCAGAAAAACCCTGCCCCCTACGGCCCTCATGTTTAGACAAA
GATCTCGCCAGTGGTGTGTGCTCCCTTGAACCTGCTATGCCCCCAGTGCCTCTTTCCTCCTCTCCACCTG
GTCCTCTCAGCTCAGCCACCTTCAGCTTCGAGTCCCTGAGCAGTCCAGACGGCCCGGTTGTCATCCAGAA
CCTTCGAATCACTGGCACCATCACTGCCCGAGAGCACAGTGGGACTGGATTCCACCCATACACACTGTAC
ACTGTGAAGTACGAGACTGTCCTTAATGGCGAGAACAGCAGCGGCCTACAGCAGCTGGCCTATCACACCG
TGAACCGCCGCTACCGGGAGTTCTTGAATCTGCAGACCCGCCTGGAGGAGAAACCAGATCTACGAAAGTT
TATCAAAAATGTGAAGGGTCCAAAAAAGCTCTTTCCAGATCTTCCGTTTGGAAACATGGATAGTGACAGA
GTAGAAGCCAGGAAGAGCCTCCTGGAGTCATTCCTGAAGCAACTCTGCGCCATTCCTGAGATTGGCAACA
GTGAGGAGGTGCAGGAGTTCCTTGCTCTGAACACAGATGCTCGGATTGCCTTTGTCAAGAAACCATTCAT
GGTCTCTAGGATAGACAAGATGGTGGTGAGTGCTATCGTGGACACCTTGAAGACAGCATTTCCTCGCTCT
GAACCCCAGAGTCCCACAGAGGAGCTGAGTGAAGCAGAGAATGAAAGCAAGCCCCAGACAGAAGGCAAGA
AGGCTAGCAAGTCCAGACTGAGGTTTTCATCCAGTAAAATTGCCCCTGCACTGAGTATAGCCGAGGCACA
GGACAAGATTCTGTACTGCCTCCAGGAAGGCAATTCGGAGTCAGAAGTCCTGTCCATGTCTGGGATGGAG
TCTTTCATTGAAAAACAGACAAAGTTACTGAGAATCCAGCCAGCAGAAGTCCCGGATAAAGATCCCCAGC
AAGTGCCCAAAGAATATGTGGATAGCGGTCTGCTGGACAAAGCTGTGGTAGCCCAAGAGCTCAACAAGAG
TGGCCCGGGAACGGAGACAGAGTTAGCCGACACGGCCTTTGATCTGATCCTCCTGCTGTTGATGGAGCAA
TGGAAGTGGCTGTGTACTGAAAGCATGCAGAAGTTCCTCCACATTATTTTTGGCACACTAGTTCAGAGGT
GGCTAGAAGTGCAGGTGGCTAATCTAACATGTCCCCAGCGCTGGGCACAGTACCTCCATCTTCTTCGGGA
ATCTATCTGGCCTGGTGGAGTGCTGCCCAAGTTTCCACGGCCTGGAAGGACGCAGGCACAGAAAGCAGCT
ACGGAGAAGCAGGCTTTGCAGAGCTTGATGGATCTCCTTCCAGATTTTTTGGTAGAAATCCTGGGAGTGA
ACAAGTGTCGGCTGAGCTGGAGTCTTGTCTTGGAGTCATTCCAGCAGCCCCTCATCAACAGACATTTGAT
TTACTGCCTTGGAGACATTATCCTGGAGTTGCTGGACCTCAGTGCCTCTGTTGAAGAGTGTGCCCCAGCT
ACCTCTGCCTCAGATTCCCCAGGAAGCCTCAAGAAGATGGCTGTCTCCACTTAG

Translation (997 aa):
MKAQTVSPTQGTISESSYVHSNLWSSRKLMIVGVLVGWLLVIHLLVNMWLLILLCASLVALGGWLGSTAI
LGASGQLHLERFITITTCPPCPEAERQLEQEINRTIQMIIRDFVLSWYRSVSHEPAFEAEMEAAMKGLVQ
ELRRRMSIVDSHALTQRVLTLCGCHLQSYIQAKEATAKEQSCPVQPSQLWDAYCQVTAPHPAMSCPTTEV
TYARGIVNLILKELVPKPHLETRTGRHVVVEVITCNVILPLISKLSDPDWIHLILVSIFSKYRHDAAQGT
KPPCSSSVLEQPSVPTSLPLIVEVESLPVGKASSPATAPVHLTSSEPAPSPEIEEGHEAVEGDLPGMLEE
KKVGNSSSHFLQPDIRGPLFLCEDSELESPLSELSKETILLMTPGNFLSDRIQDALCALDDSGALEPKDG
EGSECMEGAEAEEAPGTDTETGMLVSVLNCPEIQIDTADKEVEQGDDTSLTALLEEPEKPCPLRPSCLDK
DLASGVCSLEPAMPPVPLSSSPPGPLSSATFSFESLSSPDGPVVIQNLRITGTITAREHSGTGFHPYTLY
TVKYETVLNGENSSGLQQLAYHTVNRRYREFLNLQTRLEEKPDLRKFIKNVKGPKKLFPDLPFGNMDSDR
VEARKSLLESFLKQLCAIPEIGNSEEVQEFLALNTDARIAFVKKPFMVSRIDKMVVSAIVDTLKTAFPRS
EPQSPTEELSEAENESKPQTEGKKASKSRLRFSSSKIAPALSIAEAQDKILYCLQEGNSESEVLSMSGME
SFIEKQTKLLRIQPAEVPDKDPQQVPKEYVDSGLLDKAVVAQELNKSGPGTETELADTAFDLILLLLMEQ
WKWLCTESMQKFLHIIFGTLVQRWLEVQVANLTCPQRWAQYLHLLRESIWPGGVLPKFPRPGRTQAQKAA
TEKQALQSLMDLLPDFLVEILGVNKCRLSWSLVLESFQQPLINRHLIYCLGDIILELLDLSASVEECAPA
TSASDSPGSLKKMAVST


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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