NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS23102.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23102.1 Public Mus musculus 9 Hinfp 23 108 98 CCDS HistoryNCBI Gene:102423Re-query CCDS DB by CCDS ID:23102.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23102.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000216508.1 ENSMUSP00000149879.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000216508.1Link to Ensembl Protein Viewer:ENSMUSP00000149879.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000216508Re-query CCDS DB by Protein ID:ENSMUSP00000149879
Original member NCBI NM_172162.3 NP_751894.2 Updated not alive Link to Nucleotide Sequence:NM_172162.3Link to Protein Sequence:NP_751894.2Re-query CCDS DB by Nucleotide ID:NM_172162Re-query CCDS DB by Protein ID:NP_751894
Current member NCBI NM_172162.4 NP_751894.2 Accepted alive Link to Nucleotide Sequence:NM_172162.4Link to Protein Sequence:NP_751894.2Re-query CCDS DB by Nucleotide ID:NM_172162Re-query CCDS DB by Protein ID:NP_751894Link to BLAST:NP_751894.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_751894.2 503 Q8K1K9 503 100% 0 0

Chromosomal Locations for CCDS 23102.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 44296196 44296580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44297693 44297817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44297899 44298037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44298124 44298244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44298334 44298411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44298873 44299025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44299213 44299324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44299563 44299792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44302410 44302578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1512 nt):
ATGTCGCCTCCTGGAAAAGTTCCCCGGAAGGAGAACCTGGGGCTCCAGTGTGAGTGGGGGTCCTGCTCCT
TTGTGTGCTCGGCCATGGAGGAGTTCTTCGACCATGTCACTCAGCACCTGCAGCAGCACATGCATGGCTC
TAAGGAAGAAGAGGAAGAGGACCCACTTGAGGAAGAATTCTCCTGCTTGTGGCAGGAATGTGGCTTTTGC
TCTCTGGACAGTTCTGCCGACCTCATCCGCCATGTCTACTTCCACTGCTACCACACCAAGCTAAAACAGT
GGGGGCTGCAAGCCTTACAAAGCCAGGCTGACCTCAGCCCCTGCATCCTGGACTTTCAGAGCCGGAACGT
CATCCCTGACACCCCTGACCATTTCCTGTGCCTGTGGGAACATTGCGAGAGTGTCTTCGACAATCCTGAG
TGGTTCTATCGGCATGTGGATGCGCACAGCCTGTGCTGTGAATACCAAGCTGTCAGCAAGGACAACCATG
TGGTGCAGTGTGGCTGGAAAGGCTGTACCTGTACCTTCAAGGACCGGTGTAAGCTTCGAGAACACCTCCG
CAGCCACACCCAGGAGAAGGTGGTGGCCTGTCCCACCTGTGGGGGCATGTTTGCCAACAACACCAAGTTC
TTAGATCACATCCGTCGCCAGACCTCATTGGATCAGCAGCGATTCCAGTGTTCCCACTGTTCCAAGAGAT
TTGCCACAGAGAGGCTCTTGCGTGACCACATGCGGAACCATGTGAATCACTATAAATGCCCTTTGTGTGA
CATGACCTGCCCACTGCCTTCTTCCCTCCGGAATCACATGCGCTTTCGACACAGTGAGGACCGACCCTAT
AAATGTGACTGTTGTGACTACAGCTGTAAGAATTTGATTGACCTCCGGAAGCACCTAGACACCCACAGCA
AGGAGTCAGCCTACAGGTGTGACTTTGAGAACTGCAATTTCAGTGCGAGGTCACTCAGCTCTGTCAAGTC
CCATCACCGCAAAGTGCATGAAGGAGACTCAGAGCCAAGGTACAAATGTCATGTCTGTGACAAATGCTTC
ACACGTGGCAACAACCTCACTGTGCACCTTCGCAAGAAGCACCAGTTCAAGTGGCCCTCAGGACACCCTC
GCTTTCGGTACAAGGAACATGAAGATGGCTACATGCGACTGCAGCTAGTTCGGTATGAGAGTGTGGAGCT
GACACAGCAGTTGCTGCAGCAGTTACAAGAAGGATCAGATCCGGGATTGGCACTGAATGAGAGCAGCCTG
CAGGGCATTGTTCTGGAAACAGTGCTAGGGGGGCCAGGACCTGAGGAAGAGACAGAAGAGGAAGGTAGGG
TTGTTGAGGGAACAGCTCTCTCAGCTTCTCAGGACAACCCCAGCTCAGCCATTCATATGGTCAGTCAGAC
AGACACCCAAGGCCAGCGAGACATTGTCTACTGTGTACTGTCTGAAGGCCCAGGAGAGCCCCCGCCAGTC
TCCGAAACCCTCAAGAGAGATGGAAAAGCTCGAGGAACCTGA

Translation (503 aa):
MSPPGKVPRKENLGLQCEWGSCSFVCSAMEEFFDHVTQHLQQHMHGSKEEEEEDPLEEEFSCLWQECGFC
SLDSSADLIRHVYFHCYHTKLKQWGLQALQSQADLSPCILDFQSRNVIPDTPDHFLCLWEHCESVFDNPE
WFYRHVDAHSLCCEYQAVSKDNHVVQCGWKGCTCTFKDRCKLREHLRSHTQEKVVACPTCGGMFANNTKF
LDHIRRQTSLDQQRFQCSHCSKRFATERLLRDHMRNHVNHYKCPLCDMTCPLPSSLRNHMRFRHSEDRPY
KCDCCDYSCKNLIDLRKHLDTHSKESAYRCDFENCNFSARSLSSVKSHHRKVHEGDSEPRYKCHVCDKCF
TRGNNLTVHLRKKHQFKWPSGHPRFRYKEHEDGYMRLQLVRYESVELTQQLLQQLQEGSDPGLALNESSL
QGIVLETVLGGPGPEEETEEEGRVVEGTALSASQDNPSSAIHMVSQTDTQGQRDIVYCVLSEGPGEPPPV
SETLKRDGKARGT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH