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Report for CCDS14291.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14291.1 Public Homo sapiens X SSX3 24 110 108 CCDS HistoryNCBI Gene:10214Re-query CCDS DB by CCDS ID:14291.1See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14291.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000298396.7 ENSP00000298396.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000298396.7Link to Ensembl Protein Viewer:ENSP00000298396.2Re-query CCDS DB by Nucleotide ID:ENST00000298396Re-query CCDS DB by Protein ID:ENSP00000298396
Original member Current member NCBI NM_021014.4 NP_066294.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_021014.4Link to Protein Sequence:NP_066294.1Re-query CCDS DB by Nucleotide ID:NM_021014Re-query CCDS DB by Protein ID:NP_066294Link to BLAST:NP_066294.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_066294.1 188 Q99909-1 188 100% 0 0

Chromosomal Locations for CCDS 14291.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 48347504 48347604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48349987 48350122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48352100 48352149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48353999 48354094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48354632 48354746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48355181 48355249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (567 nt):
ATGAACGGAGATGACACCTTTGCAAGGAGACCCACGGTTGGTGCTCAAATACCAGAGAAGATACAAAAGG
CCTTCGATGATATTGCCAAATACTTCTCTAAGGAAGAGTGGGAAAAGATGAAAGTCTCGGAGAAAATCGT
CTATGTGTATATGAAGAGAAAGTATGAGGCCATGACTAAACTAGGTTTCAAGGCCATCCTCCCATCTTTC
ATGCGTAATAAACGGGTCACAGACTTCCAGGGGAATGATTTTGATAATGACCCTAACCGTGGGAATCAGG
TTCAACGTCCTCAGATGACTTTCGGCAGGCTCCAGGGAATCTTCCCGAAGATCATGCCCAAGAAGCCAGC
AGAGGAAGGAAATGTTTCGAAGGAAGTGCCAGAAGCATCTGGCCCACAAAACGATGGGAAACAGCTGTGC
CCCCCGGGAAAACCAACTACCTCTGAGAAGATTAACATGATATCTGGACCCAAAAGGGGGGAACATGCCT
GGACCCACAGACTGCGTGAGAGAAAGCAGCTGGTGATTTATGAAGAGATCAGCGATCCTGAGGAAGATGA
TGAGTAA

Translation (188 aa):
MNGDDTFARRPTVGAQIPEKIQKAFDDIAKYFSKEEWEKMKVSEKIVYVYMKRKYEAMTKLGFKAILPSF
MRNKRVTDFQGNDFDNDPNRGNQVQRPQMTFGRLQGIFPKIMPKKPAEEGNVSKEVPEASGPQNDGKQLC
PPGKPTTSEKINMISGPKRGEHAWTHRLRERKQLVIYEEISDPEEDDE


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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