NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS12308.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12308.1 Public Homo sapiens 19 DDX39A 24 110 108 CCDS HistoryNCBI Gene:10212Re-query CCDS DB by CCDS ID:12308.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12308.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000242776.9 ENSP00000242776.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000242776.9Link to Ensembl Protein Viewer:ENSP00000242776.3Re-query CCDS DB by Nucleotide ID:ENST00000242776Re-query CCDS DB by Protein ID:ENSP00000242776
Original member Current member NCBI NM_005804.4 NP_005795.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005804.4Link to Protein Sequence:NP_005795.2Re-query CCDS DB by Nucleotide ID:NM_005804Re-query CCDS DB by Protein ID:NP_005795Link to BLAST:NP_005795.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005795.2 427 O00148-1 427 100% 0 0

Chromosomal Locations for CCDS 12308.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 14408936 14408952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 14409037 14409184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 14409303 14409447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 14409536 14409645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 14409742 14409873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 14410216 14410334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 14410989 14411172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 14411506 14411598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 14412551 14412678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 14413013 14413220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1284 nt):
ATGGCAGAACAGGATGTGGAAAACGATCTTTTGGATTACGATGAAGAGGAAGAGCCCCAGGCTCCTCAAG
AGAGCACACCAGCTCCCCCTAAGAAAGACATCAAGGGATCCTACGTTTCCATCCACAGCTCTGGCTTCCG
GGACTTTCTGCTGAAGCCGGAGCTCCTGCGGGCCATCGTGGACTGTGGCTTTGAGCATCCTTCTGAGGTC
CAGCATGAGTGCATTCCCCAGGCCATCCTGGGCATGGACGTCCTGTGCCAGGCCAAGTCCGGGATGGGCA
AGACAGCGGTCTTCGTGCTGGCCACCCTACAGCAGATTGAGCCTGTCAACGGACAGGTGACGGTCCTGGT
CATGTGCCACACGAGGGAGCTGGCCTTCCAGATCAGCAAGGAATATGAGCGCTTTTCCAAGTACATGCCC
AGCGTCAAGGTGTCTGTGTTCTTCGGTGGTCTCTCCATCAAGAAGGATGAAGAAGTGTTGAAGAAGAACT
GTCCCCATGTCGTGGTGGGGACCCCGGGCCGCATCCTGGCGCTCGTGCGGAATAGGAGCTTCAGCCTAAA
GAATGTGAAGCACTTTGTGCTGGACGAGTGTGACAAGATGCTGGAGCAGCTGGACATGCGGCGGGATGTG
CAGGAGATCTTCCGCCTGACACCACACGAGAAGCAGTGCATGATGTTCAGCGCCACCCTGAGCAAGGACA
TCCGGCCTGTGTGCAGGAAGTTCATGCAGGATCCCATGGAGGTGTTTGTGGACGACGAGACCAAGCTCAC
GCTGCACGGCCTGCAGCAGTACTACGTCAAACTCAAAGACAGTGAGAAGAACCGCAAGCTCTTTGATCTC
TTGGATGTGCTGGAGTTTAACCAGGTGATAATCTTCGTCAAGTCAGTGCAGCGCTGCATGGCCCTGGCCC
AGCTCCTCGTGGAGCAGAACTTCCCGGCCATCGCCATCCACCGGGGCATGGCCCAGGAGGAGCGCCTGTC
ACGCTATCAGCAGTTCAAGGATTTCCAGCGGCGGATCCTGGTGGCCACCAATCTGTTTGGCCGGGGGATG
GACATCGAGCGAGTCAACATCGTCTTTAACTACGACATGCCTGAGGACTCGGACACCTACCTGCACCGGG
TGGCCCGGGCGGGTCGCTTTGGCACCAAAGGCCTAGCCATCACTTTTGTGTCTGACGAGAATGATGCCAA
AATCCTCAATGACGTCCAGGACCGGTTTGAAGTTAATGTGGCAGAACTTCCAGAGGAAATCGACATCTCC
ACATACATCGAGCAGAGCCGGTAA

Translation (427 aa):
MAEQDVENDLLDYDEEEEPQAPQESTPAPPKKDIKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEV
QHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVNGQVTVLVMCHTRELAFQISKEYERFSKYMP
SVKVSVFFGGLSIKKDEEVLKKNCPHVVVGTPGRILALVRNRSFSLKNVKHFVLDECDKMLEQLDMRRDV
QEIFRLTPHEKQCMMFSATLSKDIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDSEKNRKLFDL
LDVLEFNQVIIFVKSVQRCMALAQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFGRGM
DIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNVAELPEEIDIS
TYIEQSR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH