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Report for CCDS10516.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10516.1 Public Homo sapiens 16 NMRAL1 24 110 108 CCDS HistoryNCBI Gene:57407Re-query CCDS DB by CCDS ID:10516.1Re-query CCDS DB by GeneID:57407See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10516.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000283429.11 ENSP00000283429.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000283429.11Link to Ensembl Protein Viewer:ENSP00000283429.6Re-query CCDS DB by Nucleotide ID:ENST00000283429Re-query CCDS DB by Protein ID:ENSP00000283429
Original member Current member EBI ENST00000404295.7 ENSP00000383962.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000404295.7Link to Ensembl Protein Viewer:ENSP00000383962.3Re-query CCDS DB by Nucleotide ID:ENST00000404295Re-query CCDS DB by Protein ID:ENSP00000383962
Original member Current member EBI ENST00000574733.5 ENSP00000458762.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000574733.5Link to Ensembl Protein Viewer:ENSP00000458762.1Re-query CCDS DB by Nucleotide ID:ENST00000574733Re-query CCDS DB by Protein ID:ENSP00000458762
Original member Current member EBI ENST00000574425.5 ENSP00000460263.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000574425.5Link to Ensembl Protein Viewer:ENSP00000460263.1Re-query CCDS DB by Nucleotide ID:ENST00000574425Re-query CCDS DB by Protein ID:ENSP00000460263
Original member Current member NCBI NM_001305141.3 NP_001292070.1 Accepted alive Link to Nucleotide Sequence:NM_001305141.3Link to Protein Sequence:NP_001292070.1Re-query CCDS DB by Nucleotide ID:NM_001305141Re-query CCDS DB by Protein ID:NP_001292070Link to BLAST:NP_001292070.1
Original member Current member NCBI NM_001305142.3 NP_001292071.1 Accepted alive Link to Nucleotide Sequence:NM_001305142.3Link to Protein Sequence:NP_001292071.1Re-query CCDS DB by Nucleotide ID:NM_001305142Re-query CCDS DB by Protein ID:NP_001292071Link to BLAST:NP_001292071.1
Original member Current member NCBI NM_001351994.2 NP_001338923.1 Accepted alive Link to Nucleotide Sequence:NM_001351994.2Link to Protein Sequence:NP_001338923.1Re-query CCDS DB by Nucleotide ID:NM_001351994Re-query CCDS DB by Protein ID:NP_001338923Link to BLAST:NP_001338923.1
Original member Current member NCBI NM_020677.6 NP_065728.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_020677.6Link to Protein Sequence:NP_065728.1Re-query CCDS DB by Nucleotide ID:NM_020677Re-query CCDS DB by Protein ID:NP_065728Link to BLAST:NP_065728.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001292070.1 299 Q9HBL8 299 100% 0 0
NP_001292071.1 299 Q9HBL8 299 100% 0 0
NP_001338923.1 299 Q9HBL8 299 100% 0 0
NP_065728.1 299 Q9HBL8 299 100% 0 0

Chromosomal Locations for CCDS 10516.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 4461780 4461959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4463660 4463850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4466153 4466402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4469227 4469465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4474093 4474132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (900 nt):
ATGGTGGACAAGAAACTGGTGGTGGTTTTCGGAGGCACAGGTGCCCAGGGTGGCTCCGTGGCCCGCACAC
TCCTGGAAGATGGGACATTCAAGGTTCGAGTGGTGACCCGAAACCCTAGGAAGAAGGCAGCAAAGGAGCT
GAGGCTGCAAGGTGCAGAAGTAGTGCAGGGAGACCAAGATGACCAGGTCATCATGGAGCTGGCCCTGAAT
GGGGCTTACGCCACCTTCATCGTGACCAATTACTGGGAGAGCTGCAGCCAGGAGCAGGAGGTCAAGCAGG
GGAAGCTGCTCGCTGATCTGGCCAGGCGCCTGGGCCTCCACTATGTGGTCTACAGCGGCCTGGAGAACAT
CAAGAAGCTGACGGCAGGGAGATTGGCCGCCGCGCACTTTGACGGCAAAGGGGAGGTGGAGGAATATTTC
CGGGACATTGGCGTTCCCATGACCAGTGTGCGGCTGCCCTGCTATTTTGAGAACCTCCTCTCCCACTTCT
TGCCCCAGAAAGCCCCAGACGGAAAGAGCTACTTGCTGAGCTTGCCCACAGGTGACGTTCCCATGGATGG
CATGTCCGTGTCTGACCTGGGTCCTGTGGTGCTCAGCCTTTTGAAGATGCCAGAAAAATACGTCGGCCAG
AACATCGGGCTGAGCACTTGCAGGCACACGGCCGAGGAGTACGCTGCCCTGCTCACCAAGCACACCCGCA
AGGTCGTGCACGATGCCAAGATGACTCCTGAGGACTACGAAAAGCTTGGCTTTCCCGGTGCCCGGGACCT
GGCCAACATGTTCCGTTTCTATGCCCTGAGACCCGACCGTGACATCGAGCTGACCCTGAGACTCAACCCC
AAGGCCCTGACGCTGGACCAGTGGCTGGAACAGCACAAAGGGGACTTCAACCTGCTGTGA

Translation (299 aa):
MVDKKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKAAKELRLQGAEVVQGDQDDQVIMELALN
GAYATFIVTNYWESCSQEQEVKQGKLLADLARRLGLHYVVYSGLENIKKLTAGRLAAAHFDGKGEVEEYF
RDIGVPMTSVRLPCYFENLLSHFLPQKAPDGKSYLLSLPTGDVPMDGMSVSDLGPVVLSLLKMPEKYVGQ
NIGLSTCRHTAEEYAALLTKHTRKVVHDAKMTPEDYEKLGFPGARDLANMFRFYALRPDRDIELTLRLNP
KALTLDQWLEQHKGDFNLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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