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Report for CCDS21775.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21775.1 Public Mus musculus 7 Ccp110 23 108 98 CCDS HistoryNCBI Gene:101565Re-query CCDS DB by CCDS ID:21775.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21775.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000038650.8 ENSMUSP00000038881.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000038650.8Link to Ensembl Protein Viewer:ENSMUSP00000038881.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000038650Re-query CCDS DB by Protein ID:ENSMUSP00000038881
Original member Current member EBI ENSMUST00000106557.7 ENSMUSP00000102167.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106557.7Link to Ensembl Protein Viewer:ENSMUSP00000102167.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000106557Re-query CCDS DB by Protein ID:ENSMUSP00000102167
Original member Current member NCBI NM_182995.2 NP_892040.1 Accepted alive Link to Nucleotide Sequence:NM_182995.2Link to Protein Sequence:NP_892040.1Re-query CCDS DB by Nucleotide ID:NM_182995Re-query CCDS DB by Protein ID:NP_892040Link to BLAST:NP_892040.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_892040.1 1004 Q7TSH4 1004 100% 0 0

Chromosomal Locations for CCDS 21775.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 118715374 118715514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 118717967 118718095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 118721394 118723038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 118724455 118724585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 118725303 118725459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 118726003 118726142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 118726500 118726616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 118729623 118729724 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 118729958 118730074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 118730668 118730741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 118731697 118731759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 118732394 118732453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 118732887 118732972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 118735268 118735320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3015 nt):
ATGGAGGAATATGAGGAGTTCTGCGAGAAAGCACTTGGCCGAGCTCAGGAAGCATCGCTGTCCACAGGCA
GCTTCCTGCCCGCTCAGGCAGAAAGTGTCTCACTCATCCGTTTCCATGGGGTGGCTGTACTTTCTCCACT
GCTTACCATTGAGAAGAGAAAGAAAATTCAAGAGGAAAAGCAGAAAGCACTTGATGTGCAGTCAAGAAAG
CAGGCCAACAGGAAGAAAGCCTTACTGACTCGTGTCCAGGAGATTCTTGAAAATGTTCAGGTTAGAAAAG
CACCAAATGCCAGTGATTTTGATCAGTGGGCAACAGAAACCATTTACTCTAATCCAGAAGTCACAGACTT
GAATGTTCCTGTTAGAGTTCCAAACAGCTTGCCGAGCCCCACCGAACACTGTACTTCAGTAAAGCTTGAA
AAGATAACTGGACTTTTGCCTGTGAATAATGAGGACCAACAAACCCCTAAGCGGGTGGGGCTGCCTGGAG
ACTCAGAGGTGTCTGGTTCTCTGAGGCAGTGTGAGAGTCCAGAAAGCAGGCAGGCAGAAGATGGAGCTGC
TCTAAGGCTTTCTTCAGCAAGCCCACAGGAGACCATCATTTCTGATGTCTTAGGAAAGGAAGAACAGGAC
CCATCATGTTTGGCTGAAGTCACTCCAGATCCCTACATAATGAGCCTTCAGAATCTAATGAAGAGGTCAA
AGGAATACGTGGAAAGAGAACTGTCTAGCCGGAGTCTGAGAAATAGTTTAAAGAGAAGTGTTAATGAAAC
GCATTCAGACAGAGAAAACGATGCTGCTAAGGCGAGCGACTGTGTAAAGGAGAAGGCCCCACCCATGCCC
ATAGGCAGGCACTGTGGCTCTGCCATCCCTGACAAACCAAGCCTTAATAAGTCAAATGTTCTCCTCCAAG
GTGCTTCACAAGCAAGCAGCATGGGCACGGCAGGCTTAGCTAGCTTTTCTAAGATAGACCTGCCTGCAGG
AGCTGCTCCTCCCGCTGCTCCAGATGCCGGATCAGATTTTACAGTTATTCCTACCTTTGTTACTGAAAAT
AAAGTTAAAAGTCTTAAAGGTCCATATGCCAAATTACCTAGTCCAGAGCCAAGTATGAGTCCTACGATGC
ATCGGAGGCATTCTCGGTCAGCATCAGCATGTCAGATCCTTATAAACAACCCAGTAAATGCCTGTGAGCT
GAGCCCAAAGGGGAAAGAAGAGGCAGTGGATAGAACCGCTCCAGCTGCTGCTGAGACAACAAATGAGTCT
GAAACTGTGCCAAAATCACCGACTGATTTGACAGGGGTTTGTTCAAGTAATGTTTCTGCTACCAAAATCA
CGTCTGAGAGCACAAGAGAGATGGTCGTGGGTAAGCCAAGTCAGAGGCAGCAGGCTTTAGGAGCTCACTT
AGGCAATAACGTCACTGTTGAGCGGTCTGCTATGGAAGGTCCCTTCATAGCTGATGACAGGGGAGCCCAG
AAGGTGGACGGTACTTGTATGGCTGTGCCCAAGTTGCATGAACTGCAGCCCAGCAGTCAGTGTGTGTCAA
GTCAAACCTTGGAAGATGTGTGTGAACTCAAGTCAGCCAGTCTGCTAGCAAAGAACTCCTGCAACTTACA
AATGGAACTGAATAAATCTTACGATGTGAAACACCCATCTCCCTTACTTACGCAAACCCAGACTTCCAGA
CAGCAGATGGACACACCGCCGGTGTTCCGTGGAAACGAGCAGTTTGTAGATAACAGTTTTGAGAAAGTTA
AGCGGAGACTTGATTTAGATGTTGATAGTTTACAAAAAGAAAATTGTCCTTATATTATAACAGCTGGAGT
AGCTGAGCAGGAGCGGGACCGTCTGCTGGAAAGAAGATACCCCAAGGGATTCGTCCACATTAACAAGAAT
AAGATGCTAGAAACTAGCCCCAAAGAAGGCCAGGAACTACTGAAAAGCAAGATGTTAGCTTTTGAAGAAA
TGCGAAAGAGACTAGAGGAACAGCATGCCCAGCAGTTGTCACTCCTCATAGCTGAGCAGGAGAGGGAGCA
GGAGCAACTGCAAAAGGAAATAGAAGAGCAGGAGAAGATGCTGAAGGAGAAGGCAGTTACGACGGACGTC
TCTGACTTGAACAGTGCACTGGAGTGGAGACAAAGAACCGATTCTGCTTTGCTAGAAACCATGCTGTCCC
AAGTGGACTCACTCCAGACTTCAAACAACTCTGGCTTCATAACTTCTGCCCTGCAGTACAGCTTCGGCTC
TGCAGGTGAAGCACCGTTCTACCTCTGGGGATCACTGACCAGTGGCGTGACCAGAGTCTCAGGAACAAGG
CCTTGTGGACGGGCCCAAGCTAAATGGTCTCAGGTTTTTAATCCAGAAATACACGCAAAATTTAATAAAA
TAACTGCCGTGGCAAAAGGGTTTCTTACTCGTAAACTTATGCAAACAGACAAACTGAAGCAGCTTCGACA
AACTGTAAAAGACACCATGGAATTCATACGAAGTTTTCAGTCAGAAGCCCCTCTGAAGAGAGGTGTCGTC
TCAGCCCAAGATGCTTCCCTTCAGGAACGAGTGTTAGCTCAGTTGCGAGCTGCTCTGTATGGTATTCATG
ACATCTTCTTCGTAATGGATGCAGCCGAGAGAATGTCAATCCTCCATCATGATCGAGAAGCCCGCAAAGA
GAAACTGCTCCGGCAAATGGATAAGATGAAAAGTCCACGAGTGGCGCTTTCAGTGGCAACACAGAAGTCC
CTGGACAGGAAGAAGTTCATGAAAGTTGCTGAGATGGGAATGCCAAATAAGAAGTTCCTGCTTAAACAAA
ACCCCTCAGAAACAAGAGTCCTTCAGCCAAACCAAGGACAGAATGCACCCGTTCATAGGCTACTTAGTAG
ACAAGGAACCCCTAAGACTTCAGTGAAGGGGGTTGTGCAAAATAGACAGAAGCCTTCACAGAGCAGAGTG
CCTAACAGAGCGCCTGTGTCAGGAGCATATGCAGGAAAAACCCAAAGAAAGCGGCCAAATGTTGCGACAA
TTTAA

Translation (1004 aa):
MEEYEEFCEKALGRAQEASLSTGSFLPAQAESVSLIRFHGVAVLSPLLTIEKRKKIQEEKQKALDVQSRK
QANRKKALLTRVQEILENVQVRKAPNASDFDQWATETIYSNPEVTDLNVPVRVPNSLPSPTEHCTSVKLE
KITGLLPVNNEDQQTPKRVGLPGDSEVSGSLRQCESPESRQAEDGAALRLSSASPQETIISDVLGKEEQD
PSCLAEVTPDPYIMSLQNLMKRSKEYVERELSSRSLRNSLKRSVNETHSDRENDAAKASDCVKEKAPPMP
IGRHCGSAIPDKPSLNKSNVLLQGASQASSMGTAGLASFSKIDLPAGAAPPAAPDAGSDFTVIPTFVTEN
KVKSLKGPYAKLPSPEPSMSPTMHRRHSRSASACQILINNPVNACELSPKGKEEAVDRTAPAAAETTNES
ETVPKSPTDLTGVCSSNVSATKITSESTREMVVGKPSQRQQALGAHLGNNVTVERSAMEGPFIADDRGAQ
KVDGTCMAVPKLHELQPSSQCVSSQTLEDVCELKSASLLAKNSCNLQMELNKSYDVKHPSPLLTQTQTSR
QQMDTPPVFRGNEQFVDNSFEKVKRRLDLDVDSLQKENCPYIITAGVAEQERDRLLERRYPKGFVHINKN
KMLETSPKEGQELLKSKMLAFEEMRKRLEEQHAQQLSLLIAEQEREQEQLQKEIEEQEKMLKEKAVTTDV
SDLNSALEWRQRTDSALLETMLSQVDSLQTSNNSGFITSALQYSFGSAGEAPFYLWGSLTSGVTRVSGTR
PCGRAQAKWSQVFNPEIHAKFNKITAVAKGFLTRKLMQTDKLKQLRQTVKDTMEFIRSFQSEAPLKRGVV
SAQDASLQERVLAQLRAALYGIHDIFFVMDAAERMSILHHDREARKEKLLRQMDKMKSPRVALSVATQKS
LDRKKFMKVAEMGMPNKKFLLKQNPSETRVLQPNQGQNAPVHRLLSRQGTPKTSVKGVVQNRQKPSQSRV
PNRAPVSGAYAGKTQRKRPNVATI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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