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Report for CCDS20416.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20416.1 Public Mus musculus 6 Tada3 23 108 98 CCDS HistoryNCBI Gene:101206Re-query CCDS DB by CCDS ID:20416.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20416.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032410.13 ENSMUSP00000032410.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032410.13Link to Ensembl Protein Viewer:ENSMUSP00000032410.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000032410Re-query CCDS DB by Protein ID:ENSMUSP00000032410
Original member NCBI NM_133932.2 NP_598693.1 Updated not alive Link to Nucleotide Sequence:NM_133932.2Link to Protein Sequence:NP_598693.1Re-query CCDS DB by Nucleotide ID:NM_133932Re-query CCDS DB by Protein ID:NP_598693
Current member NCBI NM_133932.3 NP_598693.1 Accepted alive Link to Nucleotide Sequence:NM_133932.3Link to Protein Sequence:NP_598693.1Re-query CCDS DB by Nucleotide ID:NM_133932Re-query CCDS DB by Protein ID:NP_598693Link to BLAST:NP_598693.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598693.1 432 Q8R0L9-1 432 100% 0 0

Chromosomal Locations for CCDS 20416.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 113366988 113367180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113370222 113370407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113370939 113371048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113372278 113372381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113372465 113372606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113374779 113374884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113375009 113375259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113375840 113376046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1299 nt):
ATGAGCGAGCTGAAGGACTGTCCACTGCAGTTTCATGACTTCAAGTCTGTGGACCACCTGAAGGTCTGTC
CCCGCTACACGGCAGTGCTGGCCCGCTCCGAGGACGATGGCATTGGCATTGAGGAGCTGGACACCCTGCA
GCTGGAGCTTGAGACTCTGCTGTCCTCTGCAAGCCGGAGACTGCGTGTACTGGAAGCTGAAACCCAGATC
CTTACTGACTGGCAGGATAAGAAAGGGGACCGACGATTCCTGAAGCTAGGTCGCGACCACGAGCTCGGTG
CTCCCCCCAAACACGGAAAGCCCAAGAAGCAGAAACTGGAAGGGAAGACAGGACATGGGCCAGGCCCTGG
CCCGGGACGACCCAAATCCAAAAACGTCCAACCCAAGATCCAGGAATATGAATTTACTGATGACCCAATC
GACGTGCCTCGGATCCCCAAGAATGATGCTCCCAACAGGTTCTGGGCCTCTGTGGAGCCCTATTGTGCCG
ACATCACCAGTGAGGAGGTACGGACACTAGAGGAGCTCCTGAAGCCCCCAGAAGATGAAGCTGAACATTA
TAAGATTCCCCCCCTAGGGAAACACTACTCCCAGCGCTGGGCCCAGGAGGATCTGCTGGAGGAGCAGAAG
GACGGCGCTCGGGCAGCAGCTGTGGCTGACAAGAAGAAAGGCCTCATAGGACCACTGACAGAACTGGACA
CAAAAGATGTGGATGCCCTGCTGAAGAAGTCTGAGGCCCAGCATGAACAGCCAGAAGACGGGTGTCCCTT
TGGAGCCCTGACACAGCGCCTGCTGCAGGCCCTAGTGGAGGAAAATATTATCTCCCCTATGGAGGACTCC
CCTATTCCTGACATGTCTGGGAAAGAGTCAGGGGCAGATGGAGCGAGCACCTCCCCGCGCAATCAGAACA
AGCCTTTCAGTGTGCCACATACCAAGTCCCTGGAGAGCCGCATCAAGGAGGAGCTGATTGCCCAGGGCCT
CCTGGAGTCTGAGGACCGGCCCGCGGAGGACTCAGAGGACGAGGTCCTTGCTGAGCTGCGCAAACGGCAA
GCTGAGCTGAAAGCACTCAGTGCACACAACCGCACCAAGAAGCATGACCTGCTGAGGCTGGCAAAGGAGG
AGGTGAGCCGGCAGGAGCTAAGGCAGCGGGTCCGCATGGCCGACAACGAAGTCATGGATGCCTTCCGGAA
GATCATGGCTGCCCGGCAGAAGAAGCGCACCCCTACAAAGAAGGAAAAGGACCAGGCCTGGAAGACCCTG
AAGGAGCGGGAAAGCATCCTGAAGCTCCTAGACGGGTAG

Translation (432 aa):
MSELKDCPLQFHDFKSVDHLKVCPRYTAVLARSEDDGIGIEELDTLQLELETLLSSASRRLRVLEAETQI
LTDWQDKKGDRRFLKLGRDHELGAPPKHGKPKKQKLEGKTGHGPGPGPGRPKSKNVQPKIQEYEFTDDPI
DVPRIPKNDAPNRFWASVEPYCADITSEEVRTLEELLKPPEDEAEHYKIPPLGKHYSQRWAQEDLLEEQK
DGARAAAVADKKKGLIGPLTELDTKDVDALLKKSEAQHEQPEDGCPFGALTQRLLQALVEENIISPMEDS
PIPDMSGKESGADGASTSPRNQNKPFSVPHTKSLESRIKEELIAQGLLESEDRPAEDSEDEVLAELRKRQ
AELKALSAHNRTKKHDLLRLAKEEVSRQELRQRVRMADNEVMDAFRKIMAARQKKRTPTKKEKDQAWKTL
KERESILKLLDG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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