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Report for CCDS85840.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
85840.1 Public Mus musculus Y Rbmyf7 23 108 98 CCDS HistoryNCBI Gene:100862394Re-query CCDS DB by CCDS ID:85840.1See the combined annotation on chromosome Y in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 85840.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000169382.2 ENSMUSP00000129249.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000169382.2Link to Ensembl Protein Viewer:ENSMUSP00000129249.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000169382Re-query CCDS DB by Protein ID:ENSMUSP00000129249
Original member Current member EBI ENSMUST00000187277.6 ENSMUSP00000140704.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000187277.6Link to Ensembl Protein Viewer:ENSMUSP00000140704.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000187277Re-query CCDS DB by Protein ID:ENSMUSP00000140704
Original member Current member NCBI NM_001270515.1 NP_001257444.1 Accepted alive Link to Nucleotide Sequence:NM_001270515.1Link to Protein Sequence:NP_001257444.1Re-query CCDS DB by Nucleotide ID:NM_001270515Re-query CCDS DB by Protein ID:NP_001257444Link to BLAST:NP_001257444.1

Chromosomal Locations for CCDS 85840.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome Y (NC_000087.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome YSee the combined annotation on chromosome Y in Sequence Viewer

Chromosome Start Stop Links
Y 3367504 3367820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 3368002 3368090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 3369341 3369421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 3370789 3370897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 3371707 3371859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 3373479 3373656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 3374766 3374872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 3375320 3375428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1143 nt):
ATGGCAGAAACTAATCAGCCTGGGAAAATTTTTATAGGAGGCCTCAACATAAAGACCAGACAAAAGACTC
TTCAAGAAATATTTGGGAGATTTGGACCAGTAGCACGTGTTATTTTGATGAGAGATCGTGAAACTAAGAA
GTCTAGAGGCTTTGCTTTCCTTACTTTCCGACGCCTTGCAGATGCTAAGAATGCTGTCAAAGAAATGAAT
GGAGTGATTTTGGATGGAAAAAGAATTAAAGTAAAACAAGCCAGGAGACCATCGTCACTTGAAAGTGGTA
GCAAGAAGAGACCACCATCCTTTTCAAGAACCAGAGGTGCTTCAAGAATTCTGAAATGTGGAAGAGGAGG
AAGAAGCAGAGCAAGAAGTGGTCCTTCATGTGAAGGGAACTTGGGTGGTGATAGATATACTCCTAATTTC
AATGTGAGTTCTTCTGGGAGACACTTTGCAGTTAAAAGAAATCCATCTTCAAAAAGGGATGATCCCCCTT
CTAAAAGATCTGCAACTTCTGCTCAGACAAGAAGCAATACTGGACTAAGAGGACGAGAACCACATCGAAG
AGAGATTTCTAGAAATATGCCAAGAGGAGAGCCGGCGTCTTCCAGAAGAGATGAGTATCCATTACCAAGG
GATTATGGCCAGTCTTCTAATGATAGGAAATATGAATCAACATCCAGAGGATACTGTGACTATGGCAATT
ACCACTCTCGGGAAGAAAGTGCATCTAAAGTCTTCAGTGATCATGCTGGCTATCTTGGAGGACGTGATAG
AGATTTCTCTGAATATTTAAGTGGAAATTCATACAGAGATACATACAGAAGTTATGGAAGATTCCATGAG
GCACCATCTGCAAGAGGTGGAAACAACCGCTATGATGACTATAGTAACTCACAAGATGGATATGGTGGAA
GAGGAGAACCATACATAAGCAACCGAAGTAACATATACTCAAGTGACTATGAACGTAGTGGTAGACAAGA
AGTGCTTCCACCACCTATTGATAGGGAATACTTTGACCGTGAGGGCAGACAGGAAAGAGGGCATTCACCT
AAGGATGGGCTGTATAGTGCATCTCGTGAATCATACAGTAGTAATACCAAGATTTGGGGGATCCCATGGA
GGTCGTGGAGAAAGCAGATATAA

Translation (380 aa):
MAETNQPGKIFIGGLNIKTRQKTLQEIFGRFGPVARVILMRDRETKKSRGFAFLTFRRLADAKNAVKEMN
GVILDGKRIKVKQARRPSSLESGSKKRPPSFSRTRGASRILKCGRGGRSRARSGPSCEGNLGGDRYTPNF
NVSSSGRHFAVKRNPSSKRDDPPSKRSATSAQTRSNTGLRGREPHRREISRNMPRGEPASSRRDEYPLPR
DYGQSSNDRKYESTSRGYCDYGNYHSREESASKVFSDHAGYLGGRDRDFSEYLSGNSYRDTYRSYGRFHE
APSARGGNNRYDDYSNSQDGYGGRGEPYISNRSNIYSSDYERSGRQEVLPPPIDREYFDREGRQERGHSP
KDGLYSASRESYSSNTKIWGIPWRSWRKQI


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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