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Report for CCDS19558.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19558.1 Public Mus musculus 5 Usp30 23 108 98 CCDS HistoryNCBI Gene:100756Re-query CCDS DB by CCDS ID:19558.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19558.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031588.11 ENSMUSP00000031588.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031588.11Link to Ensembl Protein Viewer:ENSMUSP00000031588.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000031588Re-query CCDS DB by Protein ID:ENSMUSP00000031588
Original member NCBI NM_001033202.3 NP_001028374.1 Updated not alive Link to Nucleotide Sequence:NM_001033202.3Link to Protein Sequence:NP_001028374.1Re-query CCDS DB by Nucleotide ID:NM_001033202Re-query CCDS DB by Protein ID:NP_001028374
Current member NCBI NM_001033202.4 NP_001028374.1 Accepted alive Link to Nucleotide Sequence:NM_001033202.4Link to Protein Sequence:NP_001028374.1Re-query CCDS DB by Nucleotide ID:NM_001033202Re-query CCDS DB by Protein ID:NP_001028374Link to BLAST:NP_001028374.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001028374.1 517 Q3UN04 517 100% 0 0

Chromosomal Locations for CCDS 19558.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 114100433 114100515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114102383 114102492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114103644 114103826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114105748 114105851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114111117 114111215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114111869 114111914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114112887 114112981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114119039 114119098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114119563 114119649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114120198 114120278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114120393 114120612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114121032 114121152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114121524 114121788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1554 nt):
ATGCTAAGTTCCCGGGCGCAGGCGGCGAGGACGGCGGCCGACAAGGCCCTGCAGCGCTTCCTGCGCACCG
GGGCGGCCGTCAGATACAAAGTCATGAAGAACTGGGGAGTGATCGGTGGGATTGCCGCTGCCCTGGCAGC
AGGGATCTATGTTATTTGGGGTCCCATTACAGAGAGGAAGAAGCGGAGAAAAGGGCTTGTGCCTGGCCTT
GTCAATCTGGGGAATACCTGCTTCATGAACTCGCTGCTGCAGGGCCTGTCTGCCTGCCCTGCGTTTGTCA
AGTGGCTGGAAGAGTTTACCACCCAGTACTCCAGGGACCAGCAGGGGCCACACACTCACCAGTGCCTGTC
CTTAACACTGCTGAACCTCCTGAAAGCTCTGTCCTGCCAAGAAGTCACCGAGGACGAGGTCTTGGACGCC
AGCTGTCTGCTGGACGTCCTGAGAATGTACAGATGGCAGATCTCGTCCTTTGAGGAGCAGGATGCTCACG
AGCTGTTTCATGTCATCACCTCATCACTGGAGGACGAGAGAGACCGCCAGCCTCGAGTCACCCACTTGTT
TGATGTGCATTCCCTGGAGCAGCAGTCAGAAATGGCTCCCAGACAAGTCACTTGCCACACGAGAGGGTCC
CCTCACCCCACGACCAATCACTGGAAGTCTCAGCACCCTTTCCATGGAAGACTCACCAGTAACATGGTGT
GCAAACACTGTGAACACCAGAGTCCTGTTCGGTTTGACACCTTTGACAGCCTTTCTCTCAGTATTCCAGC
TGCCACTTGGGGGCACCCACTGACACTGGACCACTGCCTTCACCACTTCATCTCATCAGAGTCCGTGCGA
GACGTTGTGTGTGACAACTGTACAAAGATTGAAGCGAGGGGGACACTGACCGGGGAGAAGGTGGAGCATC
AGAGGAGCACCTTTGTTAAACAGTTAAAACTCGGAAAGCTGCCACAGTGCCTCTGCATCCACCTGCAGCG
GCTCAGCTGGTCCAGCCACGGCACGCCCTTGAAGCGGCACGAGCACGTGCAGTTTAACGAGTTCCTGATG
ATGGACTTCTACAAGTACCGCCTCCTGGGACACAAGCCCAGCCAGCATGGCCCCAAAGCCACCGAGAACC
CAGGGTCTGCCCCAGAAGTACAGGACGCACAGGCGGCCCCAAAGCCAGGTCTGAGTCAGCCAGGGGCCCC
CAAGACACAGATTTTTCTGAATGGCGCCTGCTCCCCGTCTCTGTTGCCAGCCCTGCCTTCCCCGGTGGCC
TTCCCTCTGCCAGTGGTTCCTGACTACAGCTCCTCCACATACCTCTTCCGCTTGATGGCAGTTGTCGTTC
ACCATGGAGACATGCACTCTGGACACTTTGTCACCTACAGACGGTCACCACCTTCTGCCAAGAACCCTCT
CTCAACCAGCAACCAATGGCTGTGGATTTCTGACGACACCGTCCGCAAGGCCAGCCTGCAGGAGGTCCTG
TCCTCTAGTGCCTACCTGCTGTTCTATGAGCGAGTTCTGTCCAGGGTGCAGCAGCAGGGGCGAGAGTATA
GGTCTGAGGAGTGA

Translation (517 aa):
MLSSRAQAARTAADKALQRFLRTGAAVRYKVMKNWGVIGGIAAALAAGIYVIWGPITERKKRRKGLVPGL
VNLGNTCFMNSLLQGLSACPAFVKWLEEFTTQYSRDQQGPHTHQCLSLTLLNLLKALSCQEVTEDEVLDA
SCLLDVLRMYRWQISSFEEQDAHELFHVITSSLEDERDRQPRVTHLFDVHSLEQQSEMAPRQVTCHTRGS
PHPTTNHWKSQHPFHGRLTSNMVCKHCEHQSPVRFDTFDSLSLSIPAATWGHPLTLDHCLHHFISSESVR
DVVCDNCTKIEARGTLTGEKVEHQRSTFVKQLKLGKLPQCLCIHLQRLSWSSHGTPLKRHEHVQFNEFLM
MDFYKYRLLGHKPSQHGPKATENPGSAPEVQDAQAAPKPGLSQPGAPKTQIFLNGACSPSLLPALPSPVA
FPLPVVPDYSSSTYLFRLMAVVVHHGDMHSGHFVTYRRSPPSAKNPLSTSNQWLWISDDTVRKASLQEVL
SSSAYLLFYERVLSRVQQQGREYRSEE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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