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Report for CCDS83485.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
83485.1 Public Homo sapiens X TRPC5OS 24 110 108 CCDS HistoryNCBI Gene:100329135Re-query CCDS DB by CCDS ID:83485.1See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 83485.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000371970.2 ENSP00000490135.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000371970.2Link to Ensembl Protein Viewer:ENSP00000490135.1Re-query CCDS DB by Nucleotide ID:ENST00000371970Re-query CCDS DB by Protein ID:ENSP00000490135
Original member Current member EBI ENST00000635763.2 ENSP00000490533.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000635763.2Link to Ensembl Protein Viewer:ENSP00000490533.1Re-query CCDS DB by Nucleotide ID:ENST00000635763Re-query CCDS DB by Protein ID:ENSP00000490533
Original member Current member EBI ENST00000612026.5 ENSP00000490633.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000612026.5Link to Ensembl Protein Viewer:ENSP00000490633.1Re-query CCDS DB by Nucleotide ID:ENST00000612026Re-query CCDS DB by Protein ID:ENSP00000490633
Original member Current member NCBI NM_001195576.1 NP_001182505.1 Accepted alive Link to Nucleotide Sequence:NM_001195576.1Link to Protein Sequence:NP_001182505.1Re-query CCDS DB by Nucleotide ID:NM_001195576Re-query CCDS DB by Protein ID:NP_001182505Link to BLAST:NP_001182505.1
Original member Current member NCBI NM_001195577.2 NP_001182506.1 Accepted alive Link to Nucleotide Sequence:NM_001195577.2Link to Protein Sequence:NP_001182506.1Re-query CCDS DB by Nucleotide ID:NM_001195577Re-query CCDS DB by Protein ID:NP_001182506Link to BLAST:NP_001182506.1
Original member Current member NCBI NM_001195578.2 NP_001182507.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001195578.2Link to Protein Sequence:NP_001182507.1Re-query CCDS DB by Nucleotide ID:NM_001195578Re-query CCDS DB by Protein ID:NP_001182507Link to BLAST:NP_001182507.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001182505.1 111 A6NMA1 111 100% 0 0
NP_001182506.1 111 A6NMA1 111 100% 0 0
NP_001182507.1 111 A6NMA1 111 100% 0 0

Chromosomal Locations for CCDS 83485.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 111901850 111902185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (336 nt):
ATGGATTCTGTGTTAATTCATGTACTCATTGATGGACTTGTTGCTTGTGTAGCCCAGTTAATAAGAATAG
CTGATGAGCTTTTACAATTCATTCTACAAGTACAAGAAGTTCCTTATGTAGAAGAAAATGGTAGAGCAGA
AGAGACTGAAGCAGATGCACCTCTTCCCGAGGAGCCTTCGCTACCTGATCTCCCTGATCTCTCAGACTTA
GACTCAATACTTACACCAAGAGAGGATGAAGACCTAATATTTGATATAGATCAGGCTATGTTAGACATGG
ATAACTTATATGAAGATACAGTCTCTGGTATAAATGATGACTTAACAGGTGACTAA

Translation (111 aa):
MDSVLIHVLIDGLVACVAQLIRIADELLQFILQVQEVPYVEENGRAEETEADAPLPEEPSLPDLPDLSDL
DSILTPREDEDLIFDIDQAMLDMDNLYEDTVSGINDDLTGD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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