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Report for CCDS46263.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46263.2 Public Homo sapiens 2 ARHGEF33 24 110 108 CCDS HistoryNCBI Gene:100271715Re-query CCDS DB by CCDS ID:46263.2See the combined annotation on chromosome 2 in Sequence Viewer

Public Note for CCDS 46263.1
The coding region has been updated to represent an alternative 3' splicing pattern that is more supported by the available transcript data. It should be noted that there are no full-length transcripts representing this CCDS; it is supported by partial transcripts that tile across this locus, and by conservation data.

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 46263.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000398800.8 ENSP00000381780.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000398800.8Link to Ensembl Protein Viewer:ENSP00000381780.4Re-query CCDS DB by Nucleotide ID:ENST00000398800Re-query CCDS DB by Protein ID:ENSP00000381780
Original member Current member EBI ENST00000409978.7 ENSP00000387020.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000409978.7Link to Ensembl Protein Viewer:ENSP00000387020.1Re-query CCDS DB by Nucleotide ID:ENST00000409978Re-query CCDS DB by Protein ID:ENSP00000387020
Original member Current member NCBI NM_001145451.5 NP_001138923.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001145451.5Link to Protein Sequence:NP_001138923.2Re-query CCDS DB by Nucleotide ID:NM_001145451Re-query CCDS DB by Protein ID:NP_001138923Link to BLAST:NP_001138923.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001138923.2 870 A8MVX0-2 870 100% 0 0

Chromosomal Locations for CCDS 46263.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 38919448 38919472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 38921374 38921423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 38928907 38929071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 38929709 38929830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 38931109 38931251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 38935775 38935834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 38937335 38937559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 38943901 38944030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 38950989 38951121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 38953162 38953245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 38954373 38954456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 38956899 38957047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 38958034 38958198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 38959841 38960648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 38966006 38966145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 38973714 38973843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2613 nt):
ATGGAAAAAACCAAAACAAAGCAAGGAGAGAATGAACATATGCCGGTGAATAATCCTTCCACGCAGATTT
ACCAGTTGCAGGCCCTAGCCTCCGAACTCAAAACTGGTTTCACAGAAGCAATGCAAGAACTGTCAAGAAT
TCAACATGGAGAATATGCTTTGGAAGAAAAGGTTAAGAGCTGCAGATGTTCCATGGAAGAAAAAGTTACT
GAGATGAAGAATTCATTAAACTATTTCAAGGAAGAGCTGAGCAATGCCATGTCGATGATCCAAGCCATCA
CTTCCAAACAAGAAGAAATGCAACAGAAAATCGAGCAGCTTCAACAGGAGAAGCGAAGAGAATCTCGAAA
AGTTAAAGCCAAGAAAACTCAAAAAGAAGAGCACAGCTCACAGGCCGGGCCTGCCCAAGCACAAGGAAGT
CCTTTTCGTTCTATCAATATCCCTGAGCCTGTTCTTCCAAGCGAAGACTTTACCAACCTTTTGCCTTCTC
AGGCCTACGAGAAAGCCCAAGAGTCCAGATCTGTTCATGTAGGAGACAGTAATGTAAAAGGAATGATGGG
TCCTGGAGTGAACCCAACAACTCCAGAAGCAGAAGAAAACCTCAAGTCTTGCCTCTCGGCTGATATCCAG
TCCAAGGGCCATCTCCCATCTGGCATGTGGAGGCAGCCTAAGGATGGTAAAGAATGGGGTGAAGAATACG
TCACAAAAGACCACCCAGATAAACTCAAGGAGGCTGGCCAGGGTAGACACAGCTCCTTGGAAAACGTTTT
ATGTGAAACCTCCTTAGCTGCTAAAAGACAGACTGTGGCCCTGGAACTGCTTGAATCTGAAAGAAAATAT
GTCATTAACATCTCTCTGATCTTGAAGATAAAAGCCACATTCCAGGGGTCAGATGGAAAGAGGAATTCCA
AAGAGAGAAGCCTCTTCCCTGGCTCTTTACGGTACCTCGTCCAGCAGCACCTGGATCTGCTTCACGCACT
GCAGGAAAGGGTCCTGAAGTGGCCACGCCAAGGCGTTCTTGGAGATTTATTCCTTAAGTTAACAAATGAC
GAGAATAATTTCTTGGATTATTATGTTGCCTACCTAAGGGACCTGCCTGAGTGCATCTCATTGGTTCATG
TTGTAGTCCTGAAAGAGGGTGATGAAGAGATTAAATCTGACATCTACACGTTGTTTTTTCACATAGTCCA
GCGCATCCCTGAATATCTGATACATCTGCAGAACGTCCTGAAGTTCACAGAGCAGGAGCACCCTGACTAT
TATCTACTACTGGTGTGTGTCCAGCGCCTCCGAGTATTTATCTCACACTACACCCTGCTGTTTCAATGCA
ATGAAGATTTGCTTATTCAGAAACGGAAAAAGCTCAAGAAGTCATCCATGGCGAAGCTGTACAAAGGGCT
GGCTTCCCAGTGTGCCAATGCTGGGCAAGATGCTTCCCCCACTGCAGGTCCTGAGGCTGTCCGTGACACT
GGGATCCACTCAGAAGAGTTGCTGCAACCCTACCCTTCTGCTCCCAGTTCTGGCCCTGCCATCACACATC
TGATGCCCCCAGTGAAGAAAAGCCAACAGCAGCAAAGCCTGATGGAGAGCATGCAGCCCGGGAAGCCCAG
TGACTGGGAGCTGGAGGGCAGGAAGCACGAGCGGCCCGAGAGCCTTCTGGCACCGACGCAGTTCTGCGCG
GCCGAGCAGGACGTGAAGGCGCTGGCCGGGCCCCTGCAGGCCATCCCGGAGATGGACTTCGAGTCCTCTC
CGGCGGAGCCGCTGGGCAACGTGGAGCGCTCCCTGCGCGCCCCGGCCGAGCTCCTGCCCGATGCCCGCGG
CTTCGTGCCCGCGGCCTACGAAGAGTTCGAGTACGGCGGCGAGATCTTCGCGCTGCCCGCGCCCTACGAC
GAGGAGCCGTTCCAGGCTCCGGCCCTCTTCGAGAACTGCTCGCCTGCCTCCTCCGAGTCCAGCCTGGACA
TCTGCTTCCTGCGGCCCGTCAGCTTCGCCATGGAGGCCGAGCGGCCGGAGCACCCGCTGCAGCCGCTGCC
CAAGAGCGCTACGTCGCCGGCGGGCAGCAGCAGCGCCTACAAACTGGAGGCGGCGGCGCAGGCGCACGGC
AAGGCCAAGCCGCTGAGCCGCTCTCTCAAAGAGTTCCCGCGTGCGCCGCCAGCCGACGGCGTGGCCCCAC
GCCTCTACAGCACGCGCAGCAGCAGCGGCGGCCGCGCGCCCATCAAGGCCGAGCGCGCCGCGCAGGCGCA
CGGCCCGGCCGCCGCCGCCGTCGCCGCCCGCGGCGCATCCAGGACCTTCTTCCCCCAACAGAGGTCCCAA
AGCGAAAAACAGACCTATTTGGAAGTAAGGAGGGAGATGCATTTAGAAGATACTACCAGATTCTGTCCCA
AAGAAGAAAGAGAAAGTGAACAAACATCTTTCAGCGATCAAAATCCCAGGCAAGACCAGAAGGGGGGCTT
TCGCAGCTCCTTCCGCAAGCTCTTTAAAAAGAAGTCCAGTGGATCAGAATACAGGGAAAAAACTAATGAG
AATCCCTCAATGGATCCTTCACCCACCAAACAAGATTTCTTCAGAAACCGACTTGCTCTTGCAAATGACC
TTGACCAAGGAACAGCTGTGTAA

Translation (870 aa):
MEKTKTKQGENEHMPVNNPSTQIYQLQALASELKTGFTEAMQELSRIQHGEYALEEKVKSCRCSMEEKVT
EMKNSLNYFKEELSNAMSMIQAITSKQEEMQQKIEQLQQEKRRESRKVKAKKTQKEEHSSQAGPAQAQGS
PFRSINIPEPVLPSEDFTNLLPSQAYEKAQESRSVHVGDSNVKGMMGPGVNPTTPEAEENLKSCLSADIQ
SKGHLPSGMWRQPKDGKEWGEEYVTKDHPDKLKEAGQGRHSSLENVLCETSLAAKRQTVALELLESERKY
VINISLILKIKATFQGSDGKRNSKERSLFPGSLRYLVQQHLDLLHALQERVLKWPRQGVLGDLFLKLTND
ENNFLDYYVAYLRDLPECISLVHVVVLKEGDEEIKSDIYTLFFHIVQRIPEYLIHLQNVLKFTEQEHPDY
YLLLVCVQRLRVFISHYTLLFQCNEDLLIQKRKKLKKSSMAKLYKGLASQCANAGQDASPTAGPEAVRDT
GIHSEELLQPYPSAPSSGPAITHLMPPVKKSQQQQSLMESMQPGKPSDWELEGRKHERPESLLAPTQFCA
AEQDVKALAGPLQAIPEMDFESSPAEPLGNVERSLRAPAELLPDARGFVPAAYEEFEYGGEIFALPAPYD
EEPFQAPALFENCSPASSESSLDICFLRPVSFAMEAERPEHPLQPLPKSATSPAGSSSAYKLEAAAQAHG
KAKPLSRSLKEFPRAPPADGVAPRLYSTRSSSGGRAPIKAERAAQAHGPAAAAVAARGASRTFFPQQRSQ
SEKQTYLEVRREMHLEDTTRFCPKEERESEQTSFSDQNPRQDQKGGFRSSFRKLFKKKSSGSEYREKTNE
NPSMDPSPTKQDFFRNRLALANDLDQGTAV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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