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Report for CCDS55280.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55280.1 Public Homo sapiens 8 CCDC166 24 110 108 CCDS HistoryNCBI Gene:100130274Re-query CCDS DB by CCDS ID:55280.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 55280.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000542437.1 ENSP00000437468.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000542437.1Link to Ensembl Protein Viewer:ENSP00000437468.1Re-query CCDS DB by Nucleotide ID:ENST00000542437Re-query CCDS DB by Protein ID:ENSP00000437468
Original member Current member NCBI NM_001162914.1 NP_001156386.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001162914.1Link to Protein Sequence:NP_001156386.1Re-query CCDS DB by Nucleotide ID:NM_001162914Re-query CCDS DB by Protein ID:NP_001156386Link to BLAST:NP_001156386.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001156386.1 439 P0CW27 439 100% 0 0

Chromosomal Locations for CCDS 55280.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 143706694 143707569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 143707666 143708109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1320 nt):
ATGGCGCCCAAGAAAAAGCGCGGGCCGAGCGCAGGGAGCCAGCCAGGTGGTGCGGCGGCCGCGGGTGCCG
AGCAGCCGCTATCGGAGCGCGCGCAGTACCTGCAACGCGAACACGCGCTGCTCTCGGAGCAGCTGGACAC
CTGCGAGGAGAGCGTTGACCAGGTGCTGCGAGAGAACGCCTTCCTGGACCGCGAGGCGCTGCGCCTGCGC
GAGGAGAACCGGCTCTACGCCAGCTACGTGAGCGCGCGCGCCCAGCGCTGCGCCAAAGCCATCGTCCGGC
TGGACGAGCAGAACCGCGTGGACCTAGCGCAGATCCACTGGCAGCGGGCGGAACTGGCCTCGCTCTACCA
CGGGCGCGAGGACGGGGTGCGCGCGCAGCTGTTGGAGATGGAGGCGCGCGCGGCACAGATGGCACAGCAG
GTGCAAGAGCTGCAGCCCTACAAGGTGCTGCAGCTGGAGCAGCTGGCCCGGATCCGGGCGCTGGAGCGCG
AGCTGCTGCATATGCGCGTGGAGCACACGCAGCTGCTCCACCGCGTGAAGCGGCGCTTCCTGGAGGACAA
GGCGGCCTTCGAGCGCGAGGCGCGTCAGCGCGTGCAGTCACTGGCGCGGCGCGCGGAGCGGGAGGCGGTG
CGCGCGCTTGTGGCGCACACGCAGGCCATCAAAGCGGACAACGGACGCCTGCGGCAGGAGCTGCTGCTGC
TGCTCCGCCGGACCCAGCTGCTGCACCACACGCGGCGCCAGCTGCTGGAACAGCGCGAGCAACTGCACCG
CGAGCACGAGGACACGCGGGACCTGGCGCGTGTGCACGGCTGGCTGCGCAGGGGCCCCGGAGGCCCGCCG
CTCTGGGAGCGGCCGGCCTTCTCCCAGCCCACCTCGCGCCCCGGGTCATTAGCCGCCCCCATAAGCCCGT
CGCGCGCGGCCTCCCAGACCCCGTCTGTGGTACCGTCGCGCGCGGCCCCCCGGGCCTCGTCCGTGGTCCC
GTCGCGCGAGGCTTCCCGGGTCCCCTCGTTGGTGCTATCGAGCATGGACTCCAGGGTCCCATCGCTGGCC
ACTTCAAAGGTGGGATCCCGGATGCCATCCCTGACCGCTTCGCGCGCAGGCTCCCGGGCCCTGTCGCTGG
TGCAGTCACTCGAGGGCTCTGGGATCTCTTCGGGGTCCTCACCGAGGGTGTCCTCACAGGACACTCTCCG
CTCCACGAAGTCTGGCCCCAAGCTTCTCTCTGGCCTGTCCCGGGATCGGGATCCGGCTCTTCTCCCCCCA
CAGTCGGAGGACAGCGTGAACGCTGAAGCTGCGGCAGAAGCCTCCCCGGGTAGAGCCTGA

Translation (439 aa):
MAPKKKRGPSAGSQPGGAAAAGAEQPLSERAQYLQREHALLSEQLDTCEESVDQVLRENAFLDREALRLR
EENRLYASYVSARAQRCAKAIVRLDEQNRVDLAQIHWQRAELASLYHGREDGVRAQLLEMEARAAQMAQQ
VQELQPYKVLQLEQLARIRALERELLHMRVEHTQLLHRVKRRFLEDKAAFEREARQRVQSLARRAEREAV
RALVAHTQAIKADNGRLRQELLLLLRRTQLLHHTRRQLLEQREQLHREHEDTRDLARVHGWLRRGPGGPP
LWERPAFSQPTSRPGSLAAPISPSRAASQTPSVVPSRAAPRASSVVPSREASRVPSLVLSSMDSRVPSLA
TSKVGSRMPSLTASRAGSRALSLVQSLEGSGISSGSSPRVSSQDTLRSTKSGPKLLSGLSRDRDPALLPP
QSEDSVNAEAAAEASPGRA


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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