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Report for CCDS38316.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38316.1 Public Mus musculus 2 R3hdml 23 108 98 CCDS HistoryNCBI Gene:100043899Re-query CCDS DB by CCDS ID:38316.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38316.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000109416.2 ENSMUSP00000105043.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109416.2Link to Ensembl Protein Viewer:ENSMUSP00000105043.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000109416Re-query CCDS DB by Protein ID:ENSMUSP00000105043
Original member Current member NCBI NM_001099331.2 NP_001092801.1 Accepted alive Link to Nucleotide Sequence:NM_001099331.2Link to Protein Sequence:NP_001092801.1Re-query CCDS DB by Nucleotide ID:NM_001099331Re-query CCDS DB by Protein ID:NP_001092801Link to BLAST:NP_001092801.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001092801.1 253 A2A5I3 253 100% 0 0

Chromosomal Locations for CCDS 38316.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 163492492 163492752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 163495689 163495807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 163498295 163498427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 163499815 163499930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 163502322 163502454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (762 nt):
ATGCCTCTTCTGTCCAGCATCGTGGGCCTCACAGGCCTTCTCCTTTGGATGGGTCACACAGTGGGGGCCT
TACGGATGCCCAACACCACACTGGTCCAGGGCCGACCCAAGAACACAGCTGTGTGGCCCCTGTCTGGCCT
GGGGGTGCCCCGGCACCGCCGGAAGCGCCACATCTCTGCTCGGGACATGAGCGCTTTACTGGATTATCAC
AACCACATCCGGGCCAGCGTACACCCACCTGCTGCCAACATGGAGTATATGGTTTGGGATGAGCAGCTGG
CCAGGTCTGCTGAAGCCTGGGCCACCCAGTGCATCTGGACCCATGGACCCTCACAGCTGATGAAGTACGT
GGGCCAGAACCTCTCTATCCATTCCGGCCGGTTCCGTTCTGTGGTAGACCTTGTGAGGTCTTGGTCTGAG
GAGAAGCGCCATTACTCATTCCCGGCTCCAAAGGATTGCACCCCACACTGCCCTTGGCTCTGCAGTGGTC
CTGTCTGCTCCCACTATACCCAGATGGTGTGGGCATCCTCCAGTCGGCTGGGCTGTGCCATTAACACCTG
TAGCAGCATCAATGTGTGGGGCAACACCTGGCAGCAGGCTGTCTACCTGGTCTGCAACTACGCCATTAAG
GGCAACTGGATCGGAGAGGCACCCTACAAGGCCGGGAAGCCATGTTCTGCCTGTCCTCCCAGTTACCAAG
GCAACTGCAACAGCAACATGTGCTTCTCTGGGCTCAAATCCAACAGGCTCCCATGGGTCTGA

Translation (253 aa):
MPLLSSIVGLTGLLLWMGHTVGALRMPNTTLVQGRPKNTAVWPLSGLGVPRHRRKRHISARDMSALLDYH
NHIRASVHPPAANMEYMVWDEQLARSAEAWATQCIWTHGPSQLMKYVGQNLSIHSGRFRSVVDLVRSWSE
EKRHYSFPAPKDCTPHCPWLCSGPVCSHYTQMVWASSSRLGCAINTCSSINVWGNTWQQAVYLVCNYAIK
GNWIGEAPYKAGKPCSACPPSYQGNCNSNMCFSGLKSNRLPWV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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