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Report for CCDS71897.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
71897.1 Public Mus musculus 7 Vmn1r243 23 108 98 CCDS HistoryNCBI Gene:100042964Re-query CCDS DB by CCDS ID:71897.1See the combined annotation on chromosome 7 in Sequence Viewer

Public Note for CCDS 71897.1
This gene represents one of numerous vomeronasal 1 receptor genes that are present in the mouse genome. This family member lacks transcript support, and therefore this CCDS representation is inferred based on paralogous alignments.

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by CCDS collaboration)

Sequence IDs included in CCDS 71897.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000172989.1 ENSMUSP00000133350.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000172989.1Link to Ensembl Protein Viewer:ENSMUSP00000133350.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000172989Re-query CCDS DB by Protein ID:ENSMUSP00000133350
Original member Current member NCBI NM_001167158.1 NP_001160630.1 Accepted alive Link to Nucleotide Sequence:NM_001167158.1Link to Protein Sequence:NP_001160630.1Re-query CCDS DB by Nucleotide ID:NM_001167158Re-query CCDS DB by Protein ID:NP_001160630Link to BLAST:NP_001160630.1

Chromosomal Locations for CCDS 71897.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 20333142 20334065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (924 nt):
ATGTCTGCTCATGGTAAATCCGTGAAAACCACTGAGGAAGTGGCTCTTCAGCTCCTCTTGCTTTGCCAGT
TTGGGGTTGGAACTGTGGCCAATGTCTTTCTGTTTGTCCATAATTTCTATCCAGTCTTGACTGGTTCTAA
ACAGAGGCCCAGACAGGTGATTTTAAGCCACATGGCTGTGGCCAATGCCTTGACTCTCTTCCTCACTATA
TTTCCAAACAACATGATGGCTTTTGCTCCCAAAACTCCTCCAACTGAACTCAAATGTAAATTAGAATCCT
TCAGTCACCTGGTGGGAAGAAGCACAAACTTGTGTTCCACCTGTGTCCTGGGTGTCCATCAGTTTGTCAC
TCTGGTTCCTCTTAATAGAGGGAAAGGTAAACTTGTACTTAGAGCAAGTGTCACAAACATGGCAAGTTAT
TCTTCTTACAGTTGTTGGTTTTTCAGTGTATTAAGTAATATTCACATTCCAATTAAGGTCAGTGGTCCAC
AGATAACAGACAATAACACTGACTCGAAAAGAAAGTTGTTCTGTTCCACTTCTGGATTCAGTGTAGGCAT
TGTCCTCTTGCAGTTTGCCTATGATGCCACATTCATGAGCATCATGGTCTGGACCAGTGTCTCCATGGTA
CTTCTCCTTCATAGACATCGCCAGCGAATGCAGCACATCCTCACTCCCAATCAGAACCCCAGAGGCCAAG
CTGAGACAAGAGCAACCCGTACTATCTTGATGCTGGTAGTCACATTTGTTAGTTTTTATCTTCTAAATTT
TATTTGTATCATGTTACATGTCCTTTTTATGCATTCTCATTTCTTCGTAAGGCTTGTCAGTGAGATTTTA
ACTGCAGTCTTCCCCAGTATCTCTCCTTTACTGTTGATCTTCAGAGATCCCAAGGATCCTTGTTCTGTGC
TCTTCAACTGTTGA

Translation (307 aa):
MSAHGKSVKTTEEVALQLLLLCQFGVGTVANVFLFVHNFYPVLTGSKQRPRQVILSHMAVANALTLFLTI
FPNNMMAFAPKTPPTELKCKLESFSHLVGRSTNLCSTCVLGVHQFVTLVPLNRGKGKLVLRASVTNMASY
SSYSCWFFSVLSNIHIPIKVSGPQITDNNTDSKRKLFCSTSGFSVGIVLLQFAYDATFMSIMVWTSVSMV
LLLHRHRQRMQHILTPNQNPRGQAETRATRTILMLVVTFVSFYLLNFICIMLHVLFMHSHFFVRLVSEIL
TAVFPSISPLLLIFRDPKDPCSVLFNC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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