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Report for CCDS70890.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
70890.1 Public Mus musculus 18 Gm10267 23 108 98 CCDS HistoryNCBI Gene:100042855Re-query CCDS DB by CCDS ID:70890.1See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Provisional (this record has not been manually reviewed by the collaboration)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 70890.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000181652.8 ENSMUSP00000137781.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000181652.8Link to Ensembl Protein Viewer:ENSMUSP00000137781.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000181652Re-query CCDS DB by Protein ID:ENSMUSP00000137781
Original member Current member NCBI NM_001281470.1 NP_001268399.1 Accepted alive Link to Nucleotide Sequence:NM_001281470.1Link to Protein Sequence:NP_001268399.1Re-query CCDS DB by Nucleotide ID:NM_001281470Re-query CCDS DB by Protein ID:NP_001268399Link to BLAST:NP_001268399.1

Chromosomal Locations for CCDS 70890.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 44156404 44156449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 44157227 44157339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 44158304 44158341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 44159243 44159303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (258 nt):
ATGTTCATCTTCTCGAGAGTTCAAGTTATATATATTACCTTATCCTTTCTTCTTTGTTCTGAAAGTCACT
TTATAAGAAGAGCAATTTACAAGCACATAGTAATGTGTAGAGGGTTTAGCAGTAAAAGAATTTGTACCAG
AGAGTATTTTCCAGTCTGTGCAACCAATGGCCGTACTTATTTCAACAAATGCATTTTCTGTTTAGCCTAT
AGAGAAAATGATGGTTCATTTATTATGTCACATCTCGGCAAATGCTAA

Translation (85 aa):
MFIFSRVQVIYITLSFLLCSESHFIRRAIYKHIVMCRGFSSKRICTREYFPVCATNGRTYFNKCIFCLAY
RENDGSFIMSHLGKC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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