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Report for CCDS84652.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
84652.1 Public Mus musculus 3 Sprr2a3 23 108 98 CCDS HistoryNCBI Gene:100042514Re-query CCDS DB by CCDS ID:84652.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 84652.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000090872.6 ENSMUSP00000088387.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000090872.6Link to Ensembl Protein Viewer:ENSMUSP00000088387.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000090872Re-query CCDS DB by Protein ID:ENSMUSP00000088387
Original member Current member EBI ENSMUST00000193337.1 ENSMUSP00000142110.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000193337.1Link to Ensembl Protein Viewer:ENSMUSP00000142110.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000193337Re-query CCDS DB by Protein ID:ENSMUSP00000142110
Original member Current member NCBI NM_001309382.1 NP_001296311.1 Accepted alive Link to Nucleotide Sequence:NM_001309382.1Link to Protein Sequence:NP_001296311.1Re-query CCDS DB by Nucleotide ID:NM_001309382Re-query CCDS DB by Protein ID:NP_001296311Link to BLAST:NP_001296311.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001296311.1 83 Q4KL71 83 100% 0 0

Chromosomal Locations for CCDS 84652.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 92288588 92288839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (252 nt):
ATGTCTTACTACCAGCAGCAGTGCAATCAGCCGTGCCGGCCTCCTCCTGTGTGCCCACCCCCAAAGTGCC
CTGAGCCTTGTCCTCCCCAAGTGTGGCCTGGGCCTTGTCGTCCTGTCATGTGCTTTGAGCCTTGTCTTCC
TTCAGTGTGGCCTGGGCCTTGTCGTCCTGTAGTGTGCTATGAGCAATGCCCTCCTCAGCCATGGCAGTCA
ACATGCCCTCCTGTGCAATTTCCACCATGCCAGCAGAAGTGA

Translation (83 aa):
MSYYQQQCNQPCRPPPVCPPPKCPEPCPPQVWPGPCRPVMCFEPCLPSVWPGPCRPVVCYEQCPPQPWQS
TCPPVQFPPCQQK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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