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Report for CCDS52501.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52501.1 Public Mus musculus 8 Defa35 23 108 98 CCDS HistoryNCBI Gene:100041688Re-query CCDS DB by CCDS ID:52501.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52501.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000078121.3 ENSMUSP00000077259.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000078121.3Link to Ensembl Protein Viewer:ENSMUSP00000077259.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000078121Re-query CCDS DB by Protein ID:ENSMUSP00000077259
Original member Current member NCBI NM_001177481.1 NP_001170952.1 Accepted alive Link to Nucleotide Sequence:NM_001177481.1Link to Protein Sequence:NP_001170952.1Re-query CCDS DB by Nucleotide ID:NM_001177481Re-query CCDS DB by Protein ID:NP_001170952Link to BLAST:NP_001170952.1

Chromosomal Locations for CCDS 52501.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 21065066 21065237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 21065799 21065908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (282 nt):
ATGAAGACATTTGTCCTCCTCTCTGCCCTTGTCCTGCTGGCCTTCCAGGTCCAGGCTGATCCTATCCACA
AAACAGATGAAGAGACTAATACTGAGGAGCAGCCAGGGGAAGAGGACCAGGCTGTGTCTATCTCTTTTGG
AGGCCAAGAAGGGTCTGCTCTTCATGATGAATTGTCAAAAAAGCTGATATGCTATTGTAGAATAAGAGGC
TGCAAAAGAAGAGAACGCGTTTTTGGGACCTGCAGAAATCTTTTTTTAACTTTCGTATTCTGCTGCAGCT
GA

Translation (93 aa):
MKTFVLLSALVLLAFQVQADPIHKTDEETNTEEQPGEEDQAVSISFGGQEGSALHDELSKKLICYCRIRG
CKRRERVFGTCRNLFLTFVFCCS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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