NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS18114.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18114.1 Public Mus musculus 4 Or13c7c 23 108 98 CCDS HistoryNCBI Gene:100040268Re-query CCDS DB by CCDS ID:18114.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18114.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000214281.1 ENSMUSP00000149336.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000214281.1Link to Ensembl Protein Viewer:ENSMUSP00000149336.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000214281Re-query CCDS DB by Protein ID:ENSMUSP00000149336
Original member Current member EBI ENSMUST00000215442.1 ENSMUSP00000150429.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000215442.1Link to Ensembl Protein Viewer:ENSMUSP00000150429.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000215442Re-query CCDS DB by Protein ID:ENSMUSP00000150429
Original member Current member NCBI NM_019475.3 NP_062348.1 Accepted alive Link to Nucleotide Sequence:NM_019475.3Link to Protein Sequence:NP_062348.1Re-query CCDS DB by Nucleotide ID:NM_019475Re-query CCDS DB by Protein ID:NP_062348Link to BLAST:NP_062348.1

Chromosomal Locations for CCDS 18114.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 43835532 43836488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (957 nt):
ATGGATGTATCCAACCAGACGACTGTAACAGAATTTGTCCTGTTGGGCCTCTCCGCCCACCCCAAACTGG
AGAAAACCTTCTTCGTGCTCATCTTGTCAATGTACCTGGTGATCCTGCTGGGCAACGGGGTCCTCATCCT
GGTGAGCATCCTCGACTCCCACCTGCACACGCCCATGTACTTCTTCCTGGGGAACCTCTCCTTCCTGGAC
ATCTGCTACACCACCTCCTCCGTTCCCTTAGTCCTTGATGGTTTTCTGACCCCCAGGAAGACCATCTCCT
TCTCGGGCTGTGCCGTGCAGATGTTTCTCTCCTTCGCCATGGGAGCCACAGAGTGTGTGCTCCTGGGCAT
GATGGCGTTTGATCGTTATGTGGCCATCTGCAACCCCCTTAGATACCCTGTGGTCATGAACAAGGCTGCC
TATGTGCCCATGGCCGTCAGCTCCTGGGTGGCTGGCGGTGCTAACTCCTTGGTGCAGATCTCCCTTGCGG
TGCAATTGCCTTTCTGTGGGGACAATGTCATCAATCATTTCATCTGTGAGATCCTGGCAGTCTTAAAGCT
AGCCTGTGCTGACATCTCCATCAATGTGATCAGCATGGGGGTGGCCAATGTGATTTTCCTGGGGGTTCCA
GTTCTGTTCATCTTTGTCTCCTACATCTTCATACTCTCCACCATCTTGAGGATCCCCTCTGCTGAGGGGA
GGAAGAAGGCCTTCTCCACCTGCTCTGCCCACCTCACCGTGGTGATCATTTTTTATGGGACCATCCTCTT
CATGTACGGGAAGCCCAAGTCCAAGGACCCACTGGGGGCAGACAAGCAGGACCTTGCAGACAAGCTCATC
TCCCTCTTCTATGGACTGCTGACCCCCATGCTGAACCCCATCATCTACAGCCTGAGGAACAAGGACGTGA
AGGCCGCTGTGAGGAACCTGGCAAGTCACAGATGCCTCACCTTCTAA

Translation (318 aa):
MDVSNQTTVTEFVLLGLSAHPKLEKTFFVLILSMYLVILLGNGVLILVSILDSHLHTPMYFFLGNLSFLD
ICYTTSSVPLVLDGFLTPRKTISFSGCAVQMFLSFAMGATECVLLGMMAFDRYVAICNPLRYPVVMNKAA
YVPMAVSSWVAGGANSLVQISLAVQLPFCGDNVINHFICEILAVLKLACADISINVISMGVANVIFLGVP
VLFIFVSYIFILSTILRIPSAEGRKKAFSTCSAHLTVVIIFYGTILFMYGKPKSKDPLGADKQDLADKLI
SLFYGLLTPMLNPIIYSLRNKDVKAAVRNLASHRCLTF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH