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Report for CCDS57278.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57278.1 Public Mus musculus 4 Mup16 23 108 98 CCDS HistoryNCBI Gene:100039177Re-query CCDS DB by CCDS ID:57278.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57278.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000095051.5 ENSMUSP00000092661.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000095051.5Link to Ensembl Protein Viewer:ENSMUSP00000092661.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000095051Re-query CCDS DB by Protein ID:ENSMUSP00000092661
Original member Current member EBI ENSMUST00000107483.7 ENSMUSP00000103107.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107483.7Link to Ensembl Protein Viewer:ENSMUSP00000103107.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000107483Re-query CCDS DB by Protein ID:ENSMUSP00000103107
Original member Current member NCBI NM_001199936.1 NP_001186865.1 Accepted alive Link to Nucleotide Sequence:NM_001199936.1Link to Protein Sequence:NP_001186865.1Re-query CCDS DB by Nucleotide ID:NM_001199936Re-query CCDS DB by Protein ID:NP_001186865Link to BLAST:NP_001186865.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001186865.1 180 P02762 180 100% 0 0

Chromosomal Locations for CCDS 57278.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 61516651 61516676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 61516840 61516941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 61517283 61517393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 61518011 61518084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 61518853 61518986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 61519325 61519420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (543 nt):
ATGAAGATGCTGTTGCTGCTGTGTTTGGGACTGACCCTAGTCTGTGTCCATGCAGAAGAAGCTAGTTCTA
CGGGAAGGAACTTTAATGTAGAAAAGATTAATGGGGAATGGCATACTATTATCCTGGCTTCTGACAAAAG
AGAAAAGATAGAAGATAATGGCAACTTTAGACTTTTTCTGGAGCAAATCCATGTCTTGGAGAATTCCTTA
GTTCTTAAATTCCATACTGTAAGAGATGAAGAGTGCTCCGAATTATCTATGGTTGCTGACAAAACAGAAA
AGGCTGGTGAATATTCTGTGACGTATGATGGATTCAATACATTTACTATACCTAAGACAGACTATGATAA
CTTTCTTATGGCTCATCTCATTAACGAAAAGGATGGGGAAACCTTCCAGCTGATGGGGCTCTATGGCCGA
GAACCAGATTTGAGTTCAGACATCAAGGAAAGGTTTGCACAACTATGTGAGGAGCATGGAATCCTTAGAG
AAAATATCATTGACCTATCCAATGCCAATCGCTGCCTCCAGGCCCGAGAATGA

Translation (180 aa):
MKMLLLLCLGLTLVCVHAEEASSTGRNFNVEKINGEWHTIILASDKREKIEDNGNFRLFLEQIHVLENSL
VLKFHTVRDEECSELSMVADKTEKAGEYSVTYDGFNTFTIPKTDYDNFLMAHLINEKDGETFQLMGLYGR
EPDLSSDIKERFAQLCEEHGILRENIIDLSNANRCLQARE


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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