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Report for CCDS18037.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18037.1 Public Mus musculus 4 Ifnk 23 108 98 CCDS HistoryNCBI Gene:387510Re-query CCDS DB by CCDS ID:18037.1Re-query CCDS DB by GeneID:387510See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 18037.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000058595.6 ENSMUSP00000054273.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000058595.6Link to Ensembl Protein Viewer:ENSMUSP00000054273.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000058595Re-query CCDS DB by Protein ID:ENSMUSP00000054273
Original member Current member NCBI NM_199157.2 NP_954608.1 Accepted alive Link to Nucleotide Sequence:NM_199157.2Link to Protein Sequence:NP_954608.1Re-query CCDS DB by Nucleotide ID:NM_199157Re-query CCDS DB by Protein ID:NP_954608Link to BLAST:NP_954608.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_954608.1 199 Q7TSL0 199 100% 0 0

Chromosomal Locations for CCDS 18037.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 35152074 35152641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 35153787 35153818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (600 nt):
ATGACTCCAAAGTTTTTATGGCTGGTGGCCCTTGTGGCTCTATACATTCCGCCCATCCAATCTCTGAACT
GTGTTTACCTGGATGATAGCATCTTGGAAAATGTGAAACTTCTGGGCAGTACCATGACCGGCTTTCCCTT
AAGATGTCTAAAAGATATCACAGATTTTAAGTTTCCTAAAGAGATTTTGCCATACATCCAGCATATGAAA
AGGGAGATAAACGCCGTCTCCTATCGTATATCCTCTCTGGCACTAACTATCTTCAATCTTAAAGGCTCCA
TCCCTCCAGTGACAGAGGAACACTGGGAACGTATCAGATCGGGACTTTTCAAACAAGTGCGGCAAGCTCA
AGAGTGCTTCATGGACGAGGAGAAAGAGAACAGGGAACATCCTCACTCCGAGGACTTCCTGACAGTCTAC
CTGGAGTTGGGCAAGTATTTCTTCAGAATCAAAAAGTTCCTGATAAATAAGAAATACAGTTTCTGTGCAT
GGAAGATTGTCACAGTGGAAATAAGAAGATGTTTCATTATATTTTCCAAGTCCAGAAAACTACTCAAAAT
GATATCAGAATCACCCACCTTCAAGCAAGAACTTAAATAG

Translation (199 aa):
MTPKFLWLVALVALYIPPIQSLNCVYLDDSILENVKLLGSTMTGFPLRCLKDITDFKFPKEILPYIQHMK
REINAVSYRISSLALTIFNLKGSIPPVTEEHWERIRSGLFKQVRQAQECFMDEEKENREHPHSEDFLTVY
LELGKYFFRIKKFLINKKYSFCAWKIVTVEIRRCFIIFSKSRKLLKMISESPTFKQELK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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