NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS38248.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38248.1 Public Mus musculus 2 Fermt1 23 108 98 CCDS HistoryNCBI Gene:241639Re-query CCDS DB by CCDS ID:38248.1Re-query CCDS DB by GeneID:241639See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38248.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000038280.4 ENSMUSP00000047616.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000038280.4Link to Ensembl Protein Viewer:ENSMUSP00000047616.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000038280Re-query CCDS DB by Protein ID:ENSMUSP00000047616
Original member Current member NCBI NM_198029.2 NP_932146.2 Accepted alive Link to Nucleotide Sequence:NM_198029.2Link to Protein Sequence:NP_932146.2Re-query CCDS DB by Nucleotide ID:NM_198029Re-query CCDS DB by Protein ID:NP_932146Link to BLAST:NP_932146.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_932146.2 677 P59113 677 100% 0 0

Chromosomal Locations for CCDS 38248.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 132906668 132906841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 132911178 132911319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 132915191 132915315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 132915901 132916122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 132917464 132917570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 132918506 132918630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 132922797 132922846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 132924957 132925088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 132925687 132925794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 132933056 132933158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 132934821 132935034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 132936016 132936162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 132939282 132939515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 132941937 132942087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2034 nt):
ATGTTGTCATCTGGTGACTTGACATCTGCATCCTGGGAGCTTGTGGTCCGAGTTGACCATGCAAATGGAG
AGCAGCAGACAGAGATCACGCTGAGGGTGTCTGGGGACCTACATATCGGGGGAGTGATGCTCAAGCTCGT
GGAACAGATGAACATAGCCCAAGACTGGTCAGACTATGCTCTGTGGTGGGAACAGAAGCGCTGCTGGCTT
CTGAAAACACACTGGACCCTGGACAAGTGTGGGGTCCAGGCTGACGCCAACCTTCTCTTCACCCCTCAGC
ATAAGATGCTTCGCCTTCGCCTGCCCAATGCCAAGACCGTGCGCCTGCGCGTCAGCTTTTCGGCTGTGGT
GTTTAAGGCTGTCGCTGATATCTGCAAAGTGCTGAATATCAGAAGACCAGAAGAACTTTCATTGTTAAAG
CCTTCTAGTGACTACTGTAAAAAGAAAAAAAAGAAAGAAAAAAATAGTAAAGAGCCAGTGATTGAAGACA
TCCTGAACCTGGAAAGTTCTTCAACAAGTTCAGGTTCCCCAGTAAGCCCCGGCTTGTACAGTAAGACCAT
GACACCCACATACGACCCCATCAATGGGACACCAGCCTTATCCACTATGACCTGGTTTGGTGATAGCCCT
TTGACAGAGCAAAACTGCAGTGTTCTGGCCTTCAGCCAACCTCCTCCATCACCAGATGTCCTTGCCGACA
TGTTCCAGCCTCGATCTTTGGTTGACAAAGCCAAGATGAATGCAGGCTGGCTGGATTCCTCACGATCCCT
TATGGAGCAAAGCATTCAGGAGGATGAGCAGCTGCAGTTGAGATTTAAATACTACACCTTCTTTGACTTG
AATCCTAAATATGACGCTGTCAGAATAAACCAACTCTACGAGCAAGCCAGGTGGGCGGTTCTCTTGGAGG
AAATCGACTGCACAGAAGAAGAAATGTTGATCTTTGCAGCCCTGCAGTATCACATCAGCAAGCTGTCCCA
GTGTGCTGAAATACAGGACTTTGCAACCAAGTCTGAGGTTGACGAGGTAGAAGCAGCATTGTCTAGTTTG
GAAGTGACCCTGGAAGGCGGGAAGGCCGACAACACTTTGGAGGACATAACTGACATCCCTAAACTCGCAG
ATTATCTCAAATTATTTAGGCCCAAGAAGCTGATGTTAAAAGCTTGCAAGCAATACTGGTTTGTCTTTAA
AGACACATCTATAGCCTACTTTAAAAATAAGGAGCTTGAACAAGGAGAGCCAATAGAGAAGCTAAACCTT
AGAGGCTGCGAAATTGTGCCAGATGTGAATGTATCGGGGAGAAAATTTGGAATCAAGTTACTAATCCCCG
TTGCTGATGGTATGAATGAAGTGTACTTGAGATGTGACCATGAGGATCAATATGCCCGATGGATGGCTGC
CTGCATCTTGGCATCGAAGGGTAAAACTATGGCAGACAGCTCCTATCAGCCAGAGGTCATCAGCATCCTT
TCGTTTCTCAAGATGAAAAACCGGAACTCATCACCTCTGGTGGCTTCCAGTCTTGAAAACATGGATATGA
ACCCGGAATGTTTAGTATCGCCCTGCTGTGCAAAAAAGCACAAGTCTAAACAGCTGGCGGCCCGGATCCT
GGAAGCTCACCATAACGTAGCCCAGATGCCTCTGGTCGAAGCCAAACTGCAGTTCATCCAGGCCTGGCAA
TCCTTACCTGAGTTCGGCCTCACCTACTACCTTGTCAGATTTAAAGGAAGCAAAAAAGATGACATCCTGG
GAGTTGCATACAACAGGTTGATTAGAATCGATGCGGTCACTGGGATACCAGTTACAACGTGGAGATTCGC
CAATATGAAGCAGTGGAATGTCAACTGGGAAATCCGGCAGGTGGCAATCGAGTTTGACCAAAACGTCTCC
ATCGCATTCACCTGCCTAAGTGCAGATTGCAAGATTGTCCATGAGTACATTGGTGGCTACATCTTCTTGT
CCACCCGATCCAAGGACCAAAACGAAACGCTCGATGAGGACCTCTTCCACAAACTGACTGGCGGTCAGGA
CTGA

Translation (677 aa):
MLSSGDLTSASWELVVRVDHANGEQQTEITLRVSGDLHIGGVMLKLVEQMNIAQDWSDYALWWEQKRCWL
LKTHWTLDKCGVQADANLLFTPQHKMLRLRLPNAKTVRLRVSFSAVVFKAVADICKVLNIRRPEELSLLK
PSSDYCKKKKKKEKNSKEPVIEDILNLESSSTSSGSPVSPGLYSKTMTPTYDPINGTPALSTMTWFGDSP
LTEQNCSVLAFSQPPPSPDVLADMFQPRSLVDKAKMNAGWLDSSRSLMEQSIQEDEQLQLRFKYYTFFDL
NPKYDAVRINQLYEQARWAVLLEEIDCTEEEMLIFAALQYHISKLSQCAEIQDFATKSEVDEVEAALSSL
EVTLEGGKADNTLEDITDIPKLADYLKLFRPKKLMLKACKQYWFVFKDTSIAYFKNKELEQGEPIEKLNL
RGCEIVPDVNVSGRKFGIKLLIPVADGMNEVYLRCDHEDQYARWMAACILASKGKTMADSSYQPEVISIL
SFLKMKNRNSSPLVASSLENMDMNPECLVSPCCAKKHKSKQLAARILEAHHNVAQMPLVEAKLQFIQAWQ
SLPEFGLTYYLVRFKGSKKDDILGVAYNRLIRIDAVTGIPVTTWRFANMKQWNVNWEIRQVAIEFDQNVS
IAFTCLSADCKIVHEYIGGYIFLSTRSKDQNETLDEDLFHKLTGGQD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH