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Report for CCDS40158.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40158.1 Public Mus musculus 7 Fam24a 23 108 98 CCDS HistoryNCBI Gene:68223Re-query CCDS DB by CCDS ID:40158.1Re-query CCDS DB by GeneID:68223See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 40158.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000084505.4 ENSMUSP00000081551.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000084505.4Link to Ensembl Protein Viewer:ENSMUSP00000081551.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000084505Re-query CCDS DB by Protein ID:ENSMUSP00000081551
Original member Current member EBI ENSMUST00000207784.1 ENSMUSP00000146579.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000207784.1Link to Ensembl Protein Viewer:ENSMUSP00000146579.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000207784Re-query CCDS DB by Protein ID:ENSMUSP00000146579
Original member Current member EBI ENSMUST00000207439.1 ENSMUSP00000146929.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000207439.1Link to Ensembl Protein Viewer:ENSMUSP00000146929.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000207439Re-query CCDS DB by Protein ID:ENSMUSP00000146929
Original member Current member NCBI NM_183272.2 NP_899095.1 Accepted alive Link to Nucleotide Sequence:NM_183272.2Link to Protein Sequence:NP_899095.1Re-query CCDS DB by Nucleotide ID:NM_183272Re-query CCDS DB by Protein ID:NP_899095Link to BLAST:NP_899095.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_899095.1 98 Q8CF27 98 100% 0 0

Chromosomal Locations for CCDS 40158.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 131335509 131335624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 131336499 131336679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (297 nt):
ATGTTCGACTTGAGGACGAAGGTTATGATCGGCATCGCTAGCACTCTGCTGATTGCTGCAATCATGCTGA
TAACGCTTGTGTTCTGTCTTTACCAGAAAATATCCAAGGCCCTGAAACTCGCAAAGGAGCCTGAATGCTG
TATTGATCCATGCAAGGACCCCAATGAGAAGATCATCCGGGCCAAGCCCATTATTGCTGAGACTTGTCGT
AACCTCCCGTGTTGTGACGACTGTAGCATCTATAAGGATGTTGGCTCCCTGCCACCTTGCTATTGTGTCA
CAAATGAGGGACTCTGA

Translation (98 aa):
MFDLRTKVMIGIASTLLIAAIMLITLVFCLYQKISKALKLAKEPECCIDPCKDPNEKIIRAKPIIAETCR
NLPCCDDCSIYKDVGSLPPCYCVTNEGL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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