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Report for CCDS17677.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17677.1 Public Mus musculus 3 Vtcn1 23 108 98 CCDS HistoryNCBI Gene:242122Re-query CCDS DB by CCDS ID:17677.1Re-query CCDS DB by GeneID:242122See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17677.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000054791.8 ENSMUSP00000057721.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000054791.8Link to Ensembl Protein Viewer:ENSMUSP00000057721.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000054791Re-query CCDS DB by Protein ID:ENSMUSP00000057721
Original member NCBI NM_178594.3 NP_848709.2 Updated not alive Link to Nucleotide Sequence:NM_178594.3Link to Protein Sequence:NP_848709.2Re-query CCDS DB by Nucleotide ID:NM_178594Re-query CCDS DB by Protein ID:NP_848709
Current member NCBI NM_178594.4 NP_848709.2 Accepted alive Link to Nucleotide Sequence:NM_178594.4Link to Protein Sequence:NP_848709.2Re-query CCDS DB by Nucleotide ID:NM_178594Re-query CCDS DB by Protein ID:NP_848709Link to BLAST:NP_848709.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_848709.2 283 Q7TSP5 283 100% 0 0

Chromosomal Locations for CCDS 17677.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 100825559 100825590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 100874761 100874825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 100883745 100884092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 100888164 100888442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 100892549 100892676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (852 nt):
ATGGCTTCCTTGGGGCAGATCATCTTTTGGAGTATTATTAACATCATCATCATCCTGGCTGGGGCCATCG
CACTCATCATTGGCTTTGGCATTTCAGGCAAGCACTTCATCACGGTCACGACCTTCACCTCAGCTGGAAA
CATTGGAGAGGACGGGACCCTGAGCTGCACTTTTGAACCTGACATCAAACTCAACGGCATCGTCATCCAG
TGGCTGAAAGAAGGCATCAAAGGTTTGGTCCACGAGTTCAAAGAAGGCAAAGACGACCTCTCACAGCAGC
ATGAGATGTTCAGAGGCCGCACAGCAGTGTTTGCTGATCAGGTGGTAGTTGGCAATGCTTCCCTGAGACT
GAAAAACGTGCAGCTCACGGATGCTGGCACCTACACATGTTACATCCGCACCTCAAAAGGCAAAGGGAAT
GCAAACCTTGAGTATAAGACCGGAGCCTTCAGTATGCCAGAGATAAATGTGGACTATAATGCCAGTTCAG
AGAGTTTACGCTGCGAGGCTCCTCGGTGGTTCCCCCAGCCCACAGTGGCCTGGGCATCTCAAGTCGACCA
AGGAGCCAATTTCTCAGAAGTCTCCAACACCAGCTTTGAGTTGAACTCTGAGAATGTGACCATGAAGGTC
GTATCTGTGCTCTACAATGTCACAATCAACAACACATACTCCTGTATGATTGAAAACGACATTGCCAAAG
CCACCGGGGACATCAAAGTGACAGATTCAGAGGTCAAAAGGCGAAGTCAGCTGCAGTTGCTGAACTCTGG
GCCTTCCCCGTGTGTTTTTTCTTCTGCCTTTGTGGCTGGCTGGGCACTCCTATCTCTCTCCTGTTGCCTG
ATGCTAAGATGA

Translation (283 aa):
MASLGQIIFWSIINIIIILAGAIALIIGFGISGKHFITVTTFTSAGNIGEDGTLSCTFEPDIKLNGIVIQ
WLKEGIKGLVHEFKEGKDDLSQQHEMFRGRTAVFADQVVVGNASLRLKNVQLTDAGTYTCYIRTSKGKGN
ANLEYKTGAFSMPEINVDYNASSESLRCEAPRWFPQPTVAWASQVDQGANFSEVSNTSFELNSENVTMKV
VSVLYNVTINNTYSCMIENDIAKATGDIKVTDSEVKRRSQLQLLNSGPSPCVFSSAFVAGWALLSLSCCL
MLR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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