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Report for CCDS22960.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22960.1 Public Mus musculus 9 Fam118b 23 108 98 CCDS HistoryNCBI Gene:109229Re-query CCDS DB by CCDS ID:22960.1Re-query CCDS DB by GeneID:109229See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22960.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000063782.11 ENSMUSP00000066281.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000063782.11Link to Ensembl Protein Viewer:ENSMUSP00000066281.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000063782Re-query CCDS DB by Protein ID:ENSMUSP00000066281
Original member Current member NCBI NM_175411.5 NP_780620.1 Accepted alive Link to Nucleotide Sequence:NM_175411.5Link to Protein Sequence:NP_780620.1Re-query CCDS DB by Nucleotide ID:NM_175411Re-query CCDS DB by Protein ID:NP_780620Link to BLAST:NP_780620.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_780620.1 275 Q8C569-2 275 100% 0 0

Chromosomal Locations for CCDS 22960.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 35217734 35217747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35217929 35217988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35221380 35221665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35223614 35223742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35235231 35235483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35244614 35244699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (828 nt):
ATGGCTTCTACAGGGAGCCAGGCCTCTGATAAAAACAAGATTTTTGGATTCTTCAATGATGGCGAACCCC
CCACCAAAAAGCCCAGGAAGCTGCTTCCAAGCCTGAAAACCAAAAAGCCTCGAGAACTTGTGCTGGTGAT
TGGGACAGGCATCAGTGCTGCGGTTGCACCGCAGGTCCCAGCCCTGAAATCCTGGAAGGGCTTAATCCAG
GCCTTACTGGATGCTGCTATTGATTTTGATCTTTTAGAAGACGAGGAAAGCAAAAAGTTTCAGAAGTGTC
TCCATGAAGACAAGAACCTCGTCCATGTCGCCCATGACCTCATTCAGAAACTCTCCCCTGTCCTGGAGTG
GGCTCAGGAGAAGCGGAAGCTAAGTGTGCTACACATCCATGGGGTCTACACCAATCCTAGCGGCATTGTC
CTCCACCCAGCTGGATATCAGAATGTGCTCAGGAACACTGAAGTTATGAGAGAGATTCAGAAACTCTATG
AAAACAAGTCATTTCTTTTCTTGGGTTGTGGCTGGACAGTGGACGACACCACTTTCCAGGCCCTGTTCCT
AGAGGCCGTCAAGCATAAATCTGACCTAGAACATTTCATGTTGGTTCGGAGAGGAGATGTAGATGAATTC
AAGAAGCTTCGAGAAAACATGTTGGACAAGGGGATAAAGGTCATCTCCTATGGAAATGACTATGCTGATC
TTCCAGAATATTTCAAACGACTGACATGTGAGATCTCCACAAGAGGCAGATCAGCAGGGATGGCAAGAGA
AGGTCAGCTAAATGGTTCATCTGCAGCACATGGTGAAATAAGAGGCTGTAGTACTTGA

Translation (275 aa):
MASTGSQASDKNKIFGFFNDGEPPTKKPRKLLPSLKTKKPRELVLVIGTGISAAVAPQVPALKSWKGLIQ
ALLDAAIDFDLLEDEESKKFQKCLHEDKNLVHVAHDLIQKLSPVLEWAQEKRKLSVLHIHGVYTNPSGIV
LHPAGYQNVLRNTEVMREIQKLYENKSFLFLGCGWTVDDTTFQALFLEAVKHKSDLEHFMLVRRGDVDEF
KKLRENMLDKGIKVISYGNDYADLPEYFKRLTCEISTRGRSAGMAREGQLNGSSAAHGEIRGCST


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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