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Report for CCDS22004.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22004.1 Public Mus musculus 7 Lrrc56 23 108 98 CCDS HistoryNCBI Gene:70552Re-query CCDS DB by CCDS ID:22004.1Re-query CCDS DB by GeneID:70552See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22004.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000047093.10 ENSMUSP00000048691.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000047093.10Link to Ensembl Protein Viewer:ENSMUSP00000048691.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000047093Re-query CCDS DB by Protein ID:ENSMUSP00000048691
Original member Current member EBI ENSMUST00000070458.10 ENSMUSP00000063912.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000070458.10Link to Ensembl Protein Viewer:ENSMUSP00000063912.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000070458Re-query CCDS DB by Protein ID:ENSMUSP00000063912
Original member Current member NCBI NM_001172064.1 NP_001165535.1 Accepted alive Link to Nucleotide Sequence:NM_001172064.1Link to Protein Sequence:NP_001165535.1Re-query CCDS DB by Nucleotide ID:NM_001172064Re-query CCDS DB by Protein ID:NP_001165535Link to BLAST:NP_001165535.1
Original member Current member NCBI NM_001357825.1 NP_001344754.1 Accepted alive Link to Nucleotide Sequence:NM_001357825.1Link to Protein Sequence:NP_001344754.1Re-query CCDS DB by Nucleotide ID:NM_001357825Re-query CCDS DB by Protein ID:NP_001344754Link to BLAST:NP_001344754.1
Original member Current member NCBI NM_153777.2 NP_722472.1 Accepted alive Link to Nucleotide Sequence:NM_153777.2Link to Protein Sequence:NP_722472.1Re-query CCDS DB by Nucleotide ID:NM_153777Re-query CCDS DB by Protein ID:NP_722472Link to BLAST:NP_722472.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001165535.1 552 Q8K375 552 100% 0 0
NP_001344754.1 552 Q8K375 552 100% 0 0
NP_722472.1 552 Q8K375 552 100% 0 0

Chromosomal Locations for CCDS 22004.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 141196993 141197169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141198274 141198361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141199779 141199839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141205463 141205559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141205636 141205836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141206335 141206518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141206948 141207109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141207186 141207250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141207487 141207623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141207831 141207970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141209384 141209730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1659 nt):
ATGGACCCAGCCTGGGATGGATCCCAGGGGTCTCGACCAGGCACAGCTAGTATCCGGGTACGGGAGCTGA
GCTGGCAGGGCCTAAACAACCCCCACCCACAAAACAAGAGACTGGGCAGCCATGGGGATATCCATAGGGA
GCGGTGGGTGGAGGAGCGCCTATCCCCTGCTCGACTGCAGGCCCTGGCCCAGGTAGATGACCTCCAACTG
GTGAGGGTGCTGGAGATGTGTGTGGACACCCGTAAGAACAGCCTGGGGAACTTCGGATTGTACCTCCCTA
ACCTGATCCAACTGAAGCTGAACCACAGCTACCTGGGCTCCCTCAGAGACCTGGGCACTTCGCTGGGCCA
CCTGCAGGTGCTGTGGCTGGCTCGCTGTGGCCTGACTGACTTGGATGGCATTGGCTCCTTCTTGGAACTG
AAGGAACTTTATGTCTCCTACAACAACATCTCGGACCTGAGCCCACTGTGCCTGCTCGAGCAGCTAGAGG
TGCTGGACCTGGAGGGCAACAATGTGGAGGACCTGGGGCAGATGCGGTACCTGCAGCTGTGCCCACGCTT
GGCCATGCTCACACTGGAGGGGAATCTGGTGTGCCTGAAGCCAGATCCTGGCCCTTCCAACAAGGCGCCC
CAGGGCTACAACTACAGAGCAGAGGTAAAGAAGCTCATCCCCCAGCTGCACGTCCTTGACGAGGTGCCCA
CTACATGCACCAGTGCGCCTGCGCCCCAGACGCTGAGCCAGGACTGGCTGATGGTGAAGGAAGCCATCAA
GGAAGGCAGCGTGCTTGACATTCTCCTCCCTCGGCTGGATGATCCCCATGGAGCCACCATTCGGAAATTT
GACCCAACCTTGCCTGTGCCTGAGACCCAGCCATGGGCCTTGTCCCTGCTGGTCCCTGGGGGCCCCTTGC
CTGAAGGTCTGCTTTCTGAGAACCCAGCCACAGAAGACCATGCCAGCAACCTCACCCATGGTCCTGGTCA
AGTTCTCTGTGGGAACCCCACCAAAGGCCTTCGGAAACGTAGAAACCAGTACCAGGAATGGGCACCCCTG
GAACAGATGCCCCCACATAGGCCAGATCTGGCCATCAGACCCTCCACCCCAAGGCCTGACCCTGCAGAAA
GCTGTGACCTGGCCATGACTGGGCTTCGGGCTTGGACGGAGCCTGGCCTGCGTCCTCTTCTCCAAAGACA
GCTGGAGTTCCAGCAGGAAAGATCTGCTCAGGTCCAAGCCCAGGACCCACAGAAGGATCCTGTAGAACAG
GAAGACCAGACTGGACCCAAGACTTCCCTAACCCCGCCACGCCTGGTCTCAGAACTTTCCAGGACATCAG
GCTTTCATTTGATCCCTTCTCCCCCAAAGTACCCAATGCCACCTGAGTCAGGCATCAGCTCCTTGGGGAG
ATCTGCAGACCTGCCCTTCAGAGGACGTAGGCTTAGAGTTCTGGGCAGCTTGGGGCCTAGCCTGGGTGAG
GGGTCTGTCCTGGGTGAGAGGTTGGCTGCAGTGACTGCCTTGAGAGCCCTGGAGGCGTCCTCAGGCCCCA
GCCATCGAGCCCAGGGATGTCCAGACCCAAAGCCAGCACTAGGTCCAGCAGCTTGCCCTCCAGGGCTCCA
CTGCCTTCATCACCTGAACCCTATCCCTCCAGCCCATTCTCTCCCTTAG

Translation (552 aa):
MDPAWDGSQGSRPGTASIRVRELSWQGLNNPHPQNKRLGSHGDIHRERWVEERLSPARLQALAQVDDLQL
VRVLEMCVDTRKNSLGNFGLYLPNLIQLKLNHSYLGSLRDLGTSLGHLQVLWLARCGLTDLDGIGSFLEL
KELYVSYNNISDLSPLCLLEQLEVLDLEGNNVEDLGQMRYLQLCPRLAMLTLEGNLVCLKPDPGPSNKAP
QGYNYRAEVKKLIPQLHVLDEVPTTCTSAPAPQTLSQDWLMVKEAIKEGSVLDILLPRLDDPHGATIRKF
DPTLPVPETQPWALSLLVPGGPLPEGLLSENPATEDHASNLTHGPGQVLCGNPTKGLRKRRNQYQEWAPL
EQMPPHRPDLAIRPSTPRPDPAESCDLAMTGLRAWTEPGLRPLLQRQLEFQQERSAQVQAQDPQKDPVEQ
EDQTGPKTSLTPPRLVSELSRTSGFHLIPSPPKYPMPPESGISSLGRSADLPFRGRRLRVLGSLGPSLGE
GSVLGERLAAVTALRALEASSGPSHRAQGCPDPKPALGPAACPPGLHCLHHLNPIPPAHSLP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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