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Report for CCDS21971.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21971.1 Public Mus musculus 7 Or13a19 23 108 98 CCDS HistoryNCBI Gene:258958Re-query CCDS DB by CCDS ID:21971.1Re-query CCDS DB by GeneID:258958See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 21971.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000078103.2 ENSMUSP00000077243.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000078103.2Link to Ensembl Protein Viewer:ENSMUSP00000077243.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000078103Re-query CCDS DB by Protein ID:ENSMUSP00000077243
Original member Current member EBI ENSMUST00000214594.1 ENSMUSP00000149361.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000214594.1Link to Ensembl Protein Viewer:ENSMUSP00000149361.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000214594Re-query CCDS DB by Protein ID:ENSMUSP00000149361
Original member Current member NCBI NM_146956.1 NP_667167.1 Accepted alive Link to Nucleotide Sequence:NM_146956.1Link to Protein Sequence:NP_667167.1Re-query CCDS DB by Nucleotide ID:NM_146956Re-query CCDS DB by Protein ID:NP_667167Link to BLAST:NP_667167.1

Chromosomal Locations for CCDS 21971.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 140322701 140323630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (930 nt):
ATGGAAATAAACAATTACACAACTGTGGTGGAGTTTGTCCTGCAGGGACTCTCTGAGGACCCTGGGCTCC
AGGCTCTCTTCTTGGCCTTTTTCTTGCTTCTTTACATCCTGGCTCTTGCAGGAAACACCCTCATCATCAT
AGCCATCAGCCTCAACTCAAGCCTTCACACCCCCATGTACTTCTTCCTTGCAAACCTGGCCCTGTTGGAC
ATCGTCTGTACATCCACTGTTCTTCCCAAGCTGCTGGAGGGTTTGGTGGGTAAGAGCAGCCACATTTCTT
ATAAGGGATGCATGACCCAACTCTTTTTCCTGACCTGGTTTCTAGGGGCTGAGCTGCTGCTGCTCACTGC
CATGGCCTATGACCGCTATGTGGCCATCTGTCGCCCACTGCACTACAGCATGCTGATGAGCTGGCCCATC
TGTGTCCTGCTCGCCGGCAGTGTGTGGGTCATCAGTGCAGCCAGCACATCTGTGCACACTGGCTTGATGG
CACGACTCAATTTCTGTGGCCCCAACCAAATTCGTCACTTTTTATGTGAAGTCCCAACACTGCTGCTTCT
GTCTTGCAGCCCAACCACCCTCAACAACATCATGATTGTCATTGCAGATGTTTATTTTGGTGTGGTCAAC
TTTCTGTTGACTATGATATCCTATAGCTTCATCATCACCAGCATCCTGCGCATCCGCTCCACAGAGGGCA
AGAAGCGAGCCTTCTCTACCTGCTCTGCCCACCTGGTGGTGGTTGTCCTGTACTACTCCACCGTCATCTA
CACCTATTTGCAGCCTGGCTCCGGATCCTCCTTGGAGAATGGCAAAGTAGTTGCTTTATTGTACACAGCA
GTCAGCCCTACCCTGAACCCCGCCATTTATTCTCTAAGGAACAAGGATGTCAAAGTTGCCCTCAAAAAGT
TATTTCCCTGTTTCCAATGA

Translation (309 aa):
MEINNYTTVVEFVLQGLSEDPGLQALFLAFFLLLYILALAGNTLIIIAISLNSSLHTPMYFFLANLALLD
IVCTSTVLPKLLEGLVGKSSHISYKGCMTQLFFLTWFLGAELLLLTAMAYDRYVAICRPLHYSMLMSWPI
CVLLAGSVWVISAASTSVHTGLMARLNFCGPNQIRHFLCEVPTLLLLSCSPTTLNNIMIVIADVYFGVVN
FLLTMISYSFIITSILRIRSTEGKKRAFSTCSAHLVVVVLYYSTVIYTYLQPGSGSSLENGKVVALLYTA
VSPTLNPAIYSLRNKDVKVALKKLFPCFQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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