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Report for CCDS22454.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22454.1 Public Mus musculus 8 Or10k2 23 108 98 CCDS HistoryNCBI Gene:258267Re-query CCDS DB by CCDS ID:22454.1Re-query CCDS DB by GeneID:258267See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22454.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000058609.4 ENSMUSP00000055435.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000058609.4Link to Ensembl Protein Viewer:ENSMUSP00000055435.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000058609Re-query CCDS DB by Protein ID:ENSMUSP00000055435
Original member Current member EBI ENSMUST00000209408.3 ENSMUSP00000147834.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000209408.3Link to Ensembl Protein Viewer:ENSMUSP00000147834.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000209408Re-query CCDS DB by Protein ID:ENSMUSP00000147834
Original member Current member EBI ENSMUST00000214156.1 ENSMUSP00000149251.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000214156.1Link to Ensembl Protein Viewer:ENSMUSP00000149251.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000214156Re-query CCDS DB by Protein ID:ENSMUSP00000149251
Original member Current member NCBI NM_146270.2 NP_666382.2 Accepted alive Link to Nucleotide Sequence:NM_146270.2Link to Protein Sequence:NP_666382.2Re-query CCDS DB by Nucleotide ID:NM_146270Re-query CCDS DB by Protein ID:NP_666382Link to BLAST:NP_666382.2

Chromosomal Locations for CCDS 22454.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 83541146 83542090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (945 nt):
ATGGAGTGTGTAAATGACACTGTGGTCAGAGAATTTGTCTTCCTTGGCTTCTCGTCTCTGGCTGAGCTGC
AGCTGCTACTCTTTGCCATCTTCCTGTCCCTCTATTTGTTCACTCTGAGCACCAACGCTGTAATTGTTTC
CACCATTGTGCTAGACAGAGCCCTTCATACGCCCATGTACTTCTTCCTTTCTGTCCTGTCCTGTTCTGAG
ACCTGCTACACCTTCGTCATTGTGCCCAAGATGCTGGTTGACTTGCTGGCGCGGAAGAAGAGCATCTCTT
TCCTCGGCTGCGCCATCCAAATGTTCACCTTCCTCTTCCTCGGCTGTTCTCATTCCTTCCTGCTGGCAGC
CATGGGTTATGATCGATACGTGGCCATTTGCCACCCTCTGCGCTACACGGTGCTCATGGGGCACAGGGTA
TGCGTGGGGCTAGTAGCTGCTGCGTGTGTCTGTGGCTTCACTGTGGCACAGGTAATCACATCCCTGGTGT
TTCGTCTACCCTTCCGCTCTTCCAATCAACTCCACCACTTTTTCTGTGACATCTCCCCTGTTCTCCAGTT
GGCATCTCACCACCCTCACTCCACTCAGATCACCATCTTCCTGCTTTGCGCGCTGGTCTTGGTTATCCCT
CTCTTCTTGATCCTGGTATCATATATTCACATCATTTCTACCATCCTCCAATTCCCTTCCACGCTGGGCA
GGTACAAAGCGTTTTCCACCTGTGCCTCTCACCTCATTGTTGTCATAGTGCACTATGGATGTGCCTCTTT
TATCTACCTAAGGCCCAAGTCCAGCTACTCTTCCAGCCAGGATGCGCTGATATCAGTATCCTACACTATC
CTAACTCCGTTATTCAATCCAGTCATCTACAGCTTAAGAAACAAAGACTTCAAATCAGCTCTTCATAGGG
TAATAGGAAGAACAGTTACCCTAAGACAACACTGA

Translation (314 aa):
MECVNDTVVREFVFLGFSSLAELQLLLFAIFLSLYLFTLSTNAVIVSTIVLDRALHTPMYFFLSVLSCSE
TCYTFVIVPKMLVDLLARKKSISFLGCAIQMFTFLFLGCSHSFLLAAMGYDRYVAICHPLRYTVLMGHRV
CVGLVAAACVCGFTVAQVITSLVFRLPFRSSNQLHHFFCDISPVLQLASHHPHSTQITIFLLCALVLVIP
LFLILVSYIHIISTILQFPSTLGRYKAFSTCASHLIVVIVHYGCASFIYLRPKSSYSSSQDALISVSYTI
LTPLFNPVIYSLRNKDFKSALHRVIGRTVTLRQH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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