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Report for CCDS23951.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23951.1 Public Mus musculus 10 Col6a2 23 108 98 CCDS HistoryNCBI Gene:12834Re-query CCDS DB by CCDS ID:23951.1Re-query CCDS DB by GeneID:12834See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23951.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000001181.12 ENSMUSP00000001181.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000001181.12Link to Ensembl Protein Viewer:ENSMUSP00000001181.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000001181Re-query CCDS DB by Protein ID:ENSMUSP00000001181
Original member Current member NCBI NM_146007.2 NP_666119.1 Accepted alive Link to Nucleotide Sequence:NM_146007.2Link to Protein Sequence:NP_666119.1Re-query CCDS DB by Nucleotide ID:NM_146007Re-query CCDS DB by Protein ID:NP_666119Link to BLAST:NP_666119.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_666119.1 1034 Q02788 1034 100% 0 0

Chromosomal Locations for CCDS 23951.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 76596213 76596811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 76603329 76603367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 76603462 76603914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 76604056 76604208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 76604345 76604390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 76604849 76604884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 76605060 76605122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 76605774 76605836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 76606172 76606207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 76606575 76606625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 76607095 76607157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 76607727 76607789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 76608107 76608169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 76608708 76608770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 76609257 76609346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 76609520 76609582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 76610160 76610222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 76610650 76610703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 76611029 76611073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 76611163 76611189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 76611416 76611442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 76611792 76611836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 76611948 76612001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 76613255 76613320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 76614109 76614129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 76614337 76614935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 76615046 76615205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3105 nt):
ATGACTACTATCAAGATGCTCCAGGGTCCTCTTTCTGTGCTCCTGATTGGGGGACTCTTGGGGGTCCTCC
ATGCCCAGCAGCAGGAAGCCATCTCACCCCAGGAGCAGGAAGCTGTCTCACCAGACATCTCCACCACTGA
AAGGAACAACAATTGTCCAGAGAAGGCCGACTGCCCAGTCAACGTGTATTTCGTGTTGGACACCTCAGAG
AGCGTGGCCATGCAGTCCCCGACAGACAGCCTGCTCTATCATATGCAGCAGTTCGTACCGCAGTTTATCA
GCCAGCTGCAGAACGAGTTCTACCTGGACCAGGTGGCCCTGAGCTGGCGCTACGGTGGTCTACACTTCTC
GGACCAAGTGGAGGTGTTCAGCCCACCGGGCAGTGACCGGGCCTCCTTCACTAAGAGCCTACAAGGCATC
CGCTCCTTCCGCAGGGGCACCTTCACTGACTGTGCATTGGCTAACATGACGCAGCAGATCCGGCAGCACG
TAGGCAAGGGGGTGGTCAACTTCGCCGTGGTCATCACTGACGGCCACGTCACGGGCAGTCCGTGTGGGGG
CATCAAGATGCAGGCTGAGCGTGCCCGTGAAGAGGGCATCCGGCTCTTCGCTGTGGCCCCTAACAGGAAC
CTAAACGAACAAGGCCTGAGGGACATCGCTAACTCTCCACATGAGCTCTACCGTAACAACTACGCCACCA
TGCGACCCGACTCTACCGAGATTGACCAGGACACCATCAACCGCATCATCAAGGTCATGAAACATGAAGC
CTATGGAGAGTGCTACAAGGTGAGCTGCCTGGAGATTCCTGGACCCCACGGACCCAAGGGTTACCGAGGA
CAGAAGGGTGCCAAGGGCAACATGGGTGAACCAGGAGAGCCTGGACAGAAAGGACGACAGGGAGACCCCG
GCATCGAAGGCCCCATTGGATTCCCGGGACCGAAGGGTGTGCCTGGCTTCAAGGGAGAGAAGGGTGAATT
TGGATCGGATGGTCGGAAGGGAGCGCCTGGCCTAGCTGGCAAGAATGGAACAGATGGACAGAAGGGCAAA
CTGGGCCGCATTGGGCCTCCTGGTTGCAAGGGAGACCCCGGAAGTCGGGGCCCCGATGGATACCCTGGAG
AAGCTGGAAGCCCAGGCGAGCGAGGAGACCAGGGTGCCAAGGGGGACTCTGGCCGCCCAGGACGCAGGGG
ACCACCAGGAGATCCTGGAGACAAAGGAAGCAAGGGATATCAAGGCAACAACGGAGCCCCTGGAAGCCCG
GGAGTGAAAGGAGGCAAGGGAGGGCCTGGCCCCCGTGGACCAAAAGGAGAGCCTGGACGCAGAGGAGACC
CCGGGACCAAGGGCGGCCCCGGCAGCGATGGTCCAAAGGGAGAGAAGGGAGACCCTGGTCCTGAGGGGCC
TCGAGGCCTGGCTGGAGAAGTTGGCAGTAAAGGAGCCAAGGGAGACAGAGGTTTGCCTGGACCCAGAGGC
CCCCAGGGGGCTCTTGGAGAGCCAGGAAAGCAGGGATCTCGAGGAGACCCTGGTGACGCCGGACCTCGAG
GGGATTCAGGACAGCCGGGCCCCAAGGGCGATCCTGGAAGGCCTGGATTCAGCTACCCGGGACCTCGAGG
GACACCCGGTGAAAAAGGCGAGCCCGGTCCACCAGGCCCTGAGGGAGGCCGAGGAGACTTTGGTCTGAAA
GGAACACCCGGACGGAAGGGAGATAAAGGGGAGCCAGCTGATCCTGGTCCCCCTGGTGAACCTGGCCCTC
GGGGGCCAAGAGGAATCCCAGGACCTGAGGGAGAACCCGGCCCTCCAGGAGACCCTGGTCTCACGGAATG
TGATGTCATGACCTATGTGAGGGAGACCTGTGGATGCTGCGACTGTGAGAAGCGCTGTGGTGCCCTGGAT
GTGGTCTTCGTCATCGACAGTTCTGAGAGTATTGGCTACACCAACTTCACCTTGGAGAAGAACTTTGTCA
TCAATGTGGTCAACAGGCTAGGTGCCATTGCCAAGGACCCCAAGTCAGAAACAGGCACACGTGTGGGTGT
GGTGCAGTACAGCCACGAGGGCACCTTTGAGGCCATCCGGCTGGACGACGAGCGAGTCAACTCCCTGTCT
AGTTTCAAGGAGGCTGTCAAAAACCTTGAATGGATCGCCGGTGGCACTTGGACGCCCTCTGCCCTCAAGT
TTGCCTATAATCAGCTCATCAAAGAAAGCCGGCGCCAGAAGACCCGGGTGTTCGCAGTGGTCATCACGGA
TGGGCGCCATGACCCCCGAGATGATGACCTCAATCTTCGGGCACTGTGTGACCGAGATGTCACTGTGACA
GCCATTGGCATCGGTGACATGTTCCACGAGACTCATGAGAGTGAGAACCTCTACTCCATTGCCTGTGACA
AGCCACAGCAAGTGCGCAACATGACGCTGTTCTCTGACCTGGTGGCCGAGAAGTTCATCGATGACATGGA
AGACGTCCTTTGTCCAGACCCCCAGATCGTGTGTCCAGAACTTCCCTGCCAAACAGAGCTCTATGTGGCC
CAGTGCACACAACGGCCCGTGGACATTGTCTTCCTGCTGGATGGCTCGGAGCGGCTGGGCGAGCAGAACT
TCCACAAGGTGCGGCGCTTCGTGGAGGACGTGTCCCGGCGCCTGACTCTGGCCCGGAGGGATGATGACCC
ACTCAACGCCCGCATGGCTCTGTTGCAATATGGCAGCCAGAATCAGCAACAGGTGGCCTTCCCACTGACC
TACAACGTGACCACCATCCACGAGGCCCTGGAGAGGGCCACCTACCTCAATTCCTTTTCTCACGTGGGCA
CGGGCATCGTACACGCCATCAACAACGTGGTGCGGGGGGCACGGGGTGGGGCGCGGCGCCACGCAGAGCT
CTCCTTCGTCTTCCTCACGGACGGTGTCACCGGCAATGACAGCCTGGAGGAGTCAGTGCACTCTATGCGT
AAGCAGAACGTGGTGCCCACTGTGGTCGCTGTGGGCGGCGACGTGGACATGGATGTGCTTACTAAGATCA
GCCTGGGTGACAGGGCGGCCATCTTCCGGGAGAAAGACTTTGACAGTCTGGCCCAGCCCAGCTTCTTTGA
CAGGTTCATCCGCTGGATCTGTTAG

Translation (1034 aa):
MTTIKMLQGPLSVLLIGGLLGVLHAQQQEAISPQEQEAVSPDISTTERNNNCPEKADCPVNVYFVLDTSE
SVAMQSPTDSLLYHMQQFVPQFISQLQNEFYLDQVALSWRYGGLHFSDQVEVFSPPGSDRASFTKSLQGI
RSFRRGTFTDCALANMTQQIRQHVGKGVVNFAVVITDGHVTGSPCGGIKMQAERAREEGIRLFAVAPNRN
LNEQGLRDIANSPHELYRNNYATMRPDSTEIDQDTINRIIKVMKHEAYGECYKVSCLEIPGPHGPKGYRG
QKGAKGNMGEPGEPGQKGRQGDPGIEGPIGFPGPKGVPGFKGEKGEFGSDGRKGAPGLAGKNGTDGQKGK
LGRIGPPGCKGDPGSRGPDGYPGEAGSPGERGDQGAKGDSGRPGRRGPPGDPGDKGSKGYQGNNGAPGSP
GVKGGKGGPGPRGPKGEPGRRGDPGTKGGPGSDGPKGEKGDPGPEGPRGLAGEVGSKGAKGDRGLPGPRG
PQGALGEPGKQGSRGDPGDAGPRGDSGQPGPKGDPGRPGFSYPGPRGTPGEKGEPGPPGPEGGRGDFGLK
GTPGRKGDKGEPADPGPPGEPGPRGPRGIPGPEGEPGPPGDPGLTECDVMTYVRETCGCCDCEKRCGALD
VVFVIDSSESIGYTNFTLEKNFVINVVNRLGAIAKDPKSETGTRVGVVQYSHEGTFEAIRLDDERVNSLS
SFKEAVKNLEWIAGGTWTPSALKFAYNQLIKESRRQKTRVFAVVITDGRHDPRDDDLNLRALCDRDVTVT
AIGIGDMFHETHESENLYSIACDKPQQVRNMTLFSDLVAEKFIDDMEDVLCPDPQIVCPELPCQTELYVA
QCTQRPVDIVFLLDGSERLGEQNFHKVRRFVEDVSRRLTLARRDDDPLNARMALLQYGSQNQQQVAFPLT
YNVTTIHEALERATYLNSFSHVGTGIVHAINNVVRGARGGARRHAELSFVFLTDGVTGNDSLEESVHSMR
KQNVVPTVVAVGGDVDMDVLTKISLGDRAAIFREKDFDSLAQPSFFDRFIRWIC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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