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Report for CCDS18843.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18843.2 Public Mus musculus 4 Slc66a1 23 108 98 CCDS HistoryNCBI Gene:212555Re-query CCDS DB by CCDS ID:18843.2Re-query CCDS DB by GeneID:212555See the combined annotation on chromosome 4 in Sequence Viewer

Public Note for CCDS 18843.2
The coding region has been updated to extend the N-terminus by 65 codons and to alter the C-terminus to show an alternate 3' CDS, which represent a CDS that is more supported by available conservation data. The updated 5' and 3' coding regions create 4 complete transmembrane domains according to SwissProt accession Q8C4N4.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 18843.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000053862.11 ENSMUSP00000059772.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000053862.11Link to Ensembl Protein Viewer:ENSMUSP00000059772.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000053862Re-query CCDS DB by Protein ID:ENSMUSP00000059772
Original member Current member EBI ENSMUST00000139840.8 ENSMUSP00000121362.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000139840.8Link to Ensembl Protein Viewer:ENSMUSP00000121362.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000139840Re-query CCDS DB by Protein ID:ENSMUSP00000121362
Original member Current member EBI ENSMUST00000172747.7 ENSMUSP00000134464.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000172747.7Link to Ensembl Protein Viewer:ENSMUSP00000134464.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000172747Re-query CCDS DB by Protein ID:ENSMUSP00000134464
Original member NCBI NM_145384.3 NP_663359.2 Updated not alive Link to Nucleotide Sequence:NM_145384.3Link to Protein Sequence:NP_663359.2Re-query CCDS DB by Nucleotide ID:NM_145384Re-query CCDS DB by Protein ID:NP_663359
Current member NCBI NM_145384.4 NP_663359.2 Accepted alive Link to Nucleotide Sequence:NM_145384.4Link to Protein Sequence:NP_663359.2Re-query CCDS DB by Nucleotide ID:NM_145384Re-query CCDS DB by Protein ID:NP_663359Link to BLAST:NP_663359.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_663359.2 293 Q8C4N4-1 293 100% 0 0

Chromosomal Locations for CCDS 18843.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 139298892 139298969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 139300226 139300411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 139301012 139301104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 139301250 139301392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 139301790 139301877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 139302425 139302554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 139306443 139306606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (882 nt):
ATGGTCTGGAGGACACTGGGCGCCAGCAACTTTTCCACCTGTCCCAATGGCTCTGTCCAGTGGATCTGGG
ATGTGTTTGGTGAATGTGCCCAGGATGGCTGGGATGAGGCCAGCGTGGGCCTGGGCTTGGTCTCCATTCT
CTGCTTCGCTGCGTCTACCTTCCCCCAGTACATCAAAGCCTGCAAGACAGGCAACATGGACCAGGCCCTA
TCACTGTGGTTCCTGCTGGGCTGGATCGGTGGAGATTCCTGCAACCTCATTGGCTCCTTTCTGGCAGACC
AGCTACCCCTGCAGACCTACACGGCTGTGTATTATGTCCTGGCCGACCTGATGATGCTGACGCTGTACTT
CCATTATAAGTTCAAGAAGCGACCTTCTCCGTTGTCTGCCCCTATCAATTCTGTGCTCTTGTTCATCTTG
GGGACGGTGTGTATCACACCACTGTTGAGCAGCACTGATCCTGTGGCTGTCCCCAGGGAAGGCTTCCGGG
GGCGGACACTCCTGTCTGTGGAGCCAGGCAATAAGCCCTTCACAAAGAAGGAGGTCATCGGCTTTGTCAT
CGGCTCCGCCTCCAGCTTGCTGTACCTGCTCTCGAGGCTGCCTCAGATTCGCACCAATTTCATACGGCAG
TCAACCCAAGGCATCTCCTACTCGCTGTTCGCACTGGTGATGCTGGGGAACACGCTGTACGGGCTCAGCG
TGCTGCTCAAGAACCCCGAGGTGGGCCAGAGTGAGGGCAGCTACCTGCTGCACCACCTGCCCTGGCTCGT
GGGCAGCCTGGGGGTGCTGCTGCTCGACACCATCATCTCCATCCAGTTCCTGGTGTACAGAAGCCATGAG
ACTGCTGCTGCCTCAGAGCGAGAGCCCCTCCTCCCCAGCTGA

Translation (293 aa):
MVWRTLGASNFSTCPNGSVQWIWDVFGECAQDGWDEASVGLGLVSILCFAASTFPQYIKACKTGNMDQAL
SLWFLLGWIGGDSCNLIGSFLADQLPLQTYTAVYYVLADLMMLTLYFHYKFKKRPSPLSAPINSVLLFIL
GTVCITPLLSSTDPVAVPREGFRGRTLLSVEPGNKPFTKKEVIGFVIGSASSLLYLLSRLPQIRTNFIRQ
STQGISYSLFALVMLGNTLYGLSVLLKNPEVGQSEGSYLLHHLPWLVGSLGVLLLDTIISIQFLVYRSHE
TAAASEREPLLPS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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