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Report for CCDS48316.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48316.1 Public Mus musculus 1 Trpm8 23 108 98 CCDS HistoryNCBI Gene:171382Re-query CCDS DB by CCDS ID:48316.1Re-query CCDS DB by GeneID:171382See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48316.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000040210.13 ENSMUSP00000036991.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000040210.13Link to Ensembl Protein Viewer:ENSMUSP00000036991.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000040210Re-query CCDS DB by Protein ID:ENSMUSP00000036991
Original member Current member EBI ENSMUST00000113114.9 ENSMUSP00000108739.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113114.9Link to Ensembl Protein Viewer:ENSMUSP00000108739.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000113114Re-query CCDS DB by Protein ID:ENSMUSP00000108739
Original member Current member EBI ENSMUST00000171176.2 ENSMUSP00000131209.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000171176.2Link to Ensembl Protein Viewer:ENSMUSP00000131209.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000171176Re-query CCDS DB by Protein ID:ENSMUSP00000131209
Original member NCBI NM_134252.4 NP_599013.1 Updated not alive Link to Nucleotide Sequence:NM_134252.4Link to Protein Sequence:NP_599013.1Re-query CCDS DB by Nucleotide ID:NM_134252Re-query CCDS DB by Protein ID:NP_599013
Current member NCBI NM_134252.5 NP_599013.1 Accepted alive Link to Nucleotide Sequence:NM_134252.5Link to Protein Sequence:NP_599013.1Re-query CCDS DB by Nucleotide ID:NM_134252Re-query CCDS DB by Protein ID:NP_599013Link to BLAST:NP_599013.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_599013.1 1104 Q8R4D5 1104 100% 0 0

Chromosomal Locations for CCDS 48316.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 88318970 88319086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 88320864 88320937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 88325382 88325538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 88326405 88326582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 88328151 88328323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 88330696 88330870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 88332675 88332742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 88337113 88337310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 88341305 88341407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 88343233 88343351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 88348044 88348334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 88349847 88349942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 88350856 88350985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 88351350 88351495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 88354409 88354521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 88355131 88355347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 88359652 88359743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 88360585 88360726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 88361911 88362082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 88365040 88365217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 88374249 88374439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 88379740 88379839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 88380969 88381002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 88384663 88384713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3315 nt):
ATGTCCTTCGAGGGAGCCAGGCTCAGCATGAGGAGCCGCAGAAATGGTACTATGGGCAGCACCCGGACCC
TGTACTCCAGTGTATCTCGGAGCACAGACGTGTCCTACAGTGACAGTGATTTGGTGAATTTTATTCAGGC
AAATTTTAAAAAACGAGAATGTGTCTTCTTTACCAGAGACTCCAAGGCCATGGAGAACATATGCAAGTGT
GGTTATGCCCAGAGCCAGCACATCGAAGGCACCCAGATCAACCAAAATGAGAAGTGGAACTACAAAAAAC
ATACCAAGGAGTTTCCAACAGACGCCTTCGGGGACATTCAGTTTGAGACTCTGGGGAAGAAAGGCAAGTA
CTTACGCTTGTCCTGTGACACCGACTCTGAAACTCTCTACGAACTGCTGACCCAGCACTGGCACCTCAAA
ACACCCAACCTGGTCATTTCAGTGACGGGTGGAGCCAAAAACTTTGCTTTGAAGCCACGCATGCGCAAGA
TCTTCAGCAGGCTGATTTACATCGCACAGTCTAAAGGTGCGTGGATTCTCACTGGAGGCACTCACTACGG
CCTGATGAAGTACATAGGCGAGGTGGTGAGAGACAACACCATCAGCAGGAACTCAGAAGAGAACATCGTG
GCCATTGGCATCGCAGCATGGGGCATGGTCTCCAACAGGGACACCCTCATCAGGAGCTGTGATGATGAGG
GACATTTTTCAGCTCAATACATCATGGATGACTTTACCAGAGACCCTCTATACATCCTGGACAACAACCA
TACCCACCTGCTGCTTGTGGACAACGGTTGTCATGGACACCCCACAGTGGAAGCCAAGCTCCGGAATCAG
CTGGAAAAGTACATCTCTGAGCGCACCAGTCAAGATTCCAACTATGGTGGTAAGATCCCCATCGTGTGTT
TTGCCCAAGGAGGTGGAAGAGAGACTCTAAAAGCCATCAACACCTCTGTCAAAAGCAAGATCCCTTGTGT
GGTGGTGGAAGGCTCGGGGCAGATTGCTGATGTGATCGCCAGCCTGGTGGAGGTGGAGGATGTTTTAACC
TCTTCCATGGTCAAAGAGAAGCTGGTACGCTTTTTACCACGCACTGTGTCCCGGCTGCCTGAAGAGGAAA
TTGAGAGCTGGATCAAATGGCTCAAAGAAATTCTTGAGAGTTCTCACCTACTCACAGTAATTAAGATGGA
AGAGGCTGGAGATGAGATTGTGAGCAACGCCATTTCCTATGCGCTGTACAAAGCCTTCAGCACTAATGAG
CAAGACAAGGACAACTGGAATGGACAGCTGAAGCTTCTGCTGGAGTGGAACCAGTTGGACCTTGCCAGTG
ATGAGATCTTCACCAATGATCGCCGCTGGGAGTCTGCCGACCTTCAGGAGGTCATGTTCACGGCTCTCAT
AAAGGACAGACCCAAGTTTGTCCGCCTCTTTCTGGAGAATGGCCTGAATCTGCAGAAGTTTCTCACCAAT
GAAGTCCTCACAGAGCTCTTCTCCACCCACTTCAGCACCCTAGTGTACCGGAATCTGCAGATCGCCAAGA
ACTCCTACAATGACGCACTCCTCACCTTTGTCTGGAAGTTGGTGGCAAACTTCCGTCGAAGCTTCTGGAA
AGAGGACAGAAGCAGCAGGGAGGACTTGGATGTGGAACTCCATGATGCATCTCTCACCACCCGGCACCCG
CTGCAAGCTCTCTTCATCTGGGCCATTCTTCAGAACAAGAAGGAACTCTCCAAGGTCATTTGGGAGCAGA
CCAAAGGCTGTACTCTGGCAGCCTTGGGGGCCAGCAAGCTTCTGAAGACCCTGGCCAAAGTTAAGAATGA
TATCAACGCTGCTGGGGAATCGGAGGAACTGGCCAATGAATATGAGACCCGAGCAGTGGAGTTGTTCACC
GAGTGTTACAGCAATGATGAAGACTTGGCAGAACAGCTACTGGTCTACTCCTGCGAAGCCTGGGGTGGGA
GCAACTGTCTGGAGCTGGCAGTGGAGGCTACAGATCAGCATTTCATCGCTCAGCCTGGGGTCCAGAATTT
CCTTTCTAAGCAATGGTATGGAGAGATTTCCCGAGACACGAAGAACTGGAAGATTATCCTGTGTCTATTC
ATCATCCCCTTAGTGGGCTGTGGCCTCGTATCATTTAGGAAGAAACCCATTGACAAGCACAAGAAGCTGC
TGTGGTACTATGTGGCCTTCTTCACGTCGCCCTTCGTGGTCTTCTCCTGGAACGTGGTCTTCTACATCGC
CTTCCTCCTGCTGTTTGCCTATGTGCTGCTCATGGACTTCCACTCAGTGCCACACACCCCCGAGCTGATC
CTCTACGCCCTGGTCTTCGTCCTCTTCTGTGATGAAGTGAGGCAGTGGTACATGAACGGAGTGAATTATT
TCACCGACCTATGGAACGTTATGGACACCCTGGGACTCTTCTACTTCATAGCGGGTATTGTATTCCGGCT
CCACTCTTCTAATAAAAGCTCGTTGTACTCTGGGCGCGTCATTTTCTGTCTGGATTACATTATATTCACG
CTAAGGCTCATCCACATTTTCACCGTCAGCAGGAACTTGGGACCCAAGATTATAATGCTGCAGCGGATGC
TGATCGACGTTTTCTTCTTCCTGTTCCTCTTTGCTGTGTGGATGGTGGCCTTTGGCGTGGCCAGACAGGG
GATCCTAAGGCAAAATGAACAGCGCTGGAGATGGATCTTCCGCTCTGTCATCTATGAGCCCTACCTGGCC
ATGTTTGGCCAGGTTCCCAGTGACGTGGATAGTACCACATATGACTTCTCCCACTGTACCTTCTCGGGAA
ATGAGTCCAAGCCACTGTGTGTGGAGCTGGATGAGCACAACCTGCCCCGCTTCCCTGAGTGGATCACCAT
TCCGCTGGTGTGCATCTACATGCTCTCCACCAATATCCTTCTGGTCAACCTCCTGGTCGCCATGTTTGGC
TACACGGTAGGCATTGTACAGGAGAACAACGACCAGGTCTGGAAATTCCAGCGGTACTTCCTGGTGCAGG
AGTACTGCAACCGCCTAAACATCCCCTTCCCCTTCGTTGTCTTCGCTTATTTCTACATGGTGGTGAAGAA
GTGTTTCAAATGCTGCTGTAAAGAGAAGAATATGGAGTCTAATGCCTGCTGTTTCAGAAATGAGGACAAT
GAGACTTTGGCGTGGGAGGGTGTCATGAAGGAGAATTACCTTGTCAAGATCAACACGAAAGCCAACGACA
ACTCAGAGGAGATGAGGCATCGGTTTAGACAACTGGACTCAAAGCTTAACGACCTCAAAAGTCTTCTGAA
AGAGATTGCTAATAACATCAAGTAA

Translation (1104 aa):
MSFEGARLSMRSRRNGTMGSTRTLYSSVSRSTDVSYSDSDLVNFIQANFKKRECVFFTRDSKAMENICKC
GYAQSQHIEGTQINQNEKWNYKKHTKEFPTDAFGDIQFETLGKKGKYLRLSCDTDSETLYELLTQHWHLK
TPNLVISVTGGAKNFALKPRMRKIFSRLIYIAQSKGAWILTGGTHYGLMKYIGEVVRDNTISRNSEENIV
AIGIAAWGMVSNRDTLIRSCDDEGHFSAQYIMDDFTRDPLYILDNNHTHLLLVDNGCHGHPTVEAKLRNQ
LEKYISERTSQDSNYGGKIPIVCFAQGGGRETLKAINTSVKSKIPCVVVEGSGQIADVIASLVEVEDVLT
SSMVKEKLVRFLPRTVSRLPEEEIESWIKWLKEILESSHLLTVIKMEEAGDEIVSNAISYALYKAFSTNE
QDKDNWNGQLKLLLEWNQLDLASDEIFTNDRRWESADLQEVMFTALIKDRPKFVRLFLENGLNLQKFLTN
EVLTELFSTHFSTLVYRNLQIAKNSYNDALLTFVWKLVANFRRSFWKEDRSSREDLDVELHDASLTTRHP
LQALFIWAILQNKKELSKVIWEQTKGCTLAALGASKLLKTLAKVKNDINAAGESEELANEYETRAVELFT
ECYSNDEDLAEQLLVYSCEAWGGSNCLELAVEATDQHFIAQPGVQNFLSKQWYGEISRDTKNWKIILCLF
IIPLVGCGLVSFRKKPIDKHKKLLWYYVAFFTSPFVVFSWNVVFYIAFLLLFAYVLLMDFHSVPHTPELI
LYALVFVLFCDEVRQWYMNGVNYFTDLWNVMDTLGLFYFIAGIVFRLHSSNKSSLYSGRVIFCLDYIIFT
LRLIHIFTVSRNLGPKIIMLQRMLIDVFFFLFLFAVWMVAFGVARQGILRQNEQRWRWIFRSVIYEPYLA
MFGQVPSDVDSTTYDFSHCTFSGNESKPLCVELDEHNLPRFPEWITIPLVCIYMLSTNILLVNLLVAMFG
YTVGIVQENNDQVWKFQRYFLVQEYCNRLNIPFPFVVFAYFYMVVKKCFKCCCKEKNMESNACCFRNEDN
ETLAWEGVMKENYLVKINTKANDNSEEMRHRFRQLDSKLNDLKSLLKEIANNIK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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