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Report for CCDS20806.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20806.1 Public Mus musculus 7 Vmn1r81 23 108 98 CCDS HistoryNCBI Gene:171244Re-query CCDS DB by CCDS ID:20806.1Re-query CCDS DB by GeneID:171244See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 20806.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000086232.1 ENSMUSP00000083409.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000086232.1Link to Ensembl Protein Viewer:ENSMUSP00000083409.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000086232Re-query CCDS DB by Protein ID:ENSMUSP00000083409
Original member Current member EBI ENSMUST00000228764.1 ENSMUSP00000153767.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000228764.1Link to Ensembl Protein Viewer:ENSMUSP00000153767.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000228764Re-query CCDS DB by Protein ID:ENSMUSP00000153767
Original member Current member EBI ENSMUST00000227973.1 ENSMUSP00000154529.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000227973.1Link to Ensembl Protein Viewer:ENSMUSP00000154529.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000227973Re-query CCDS DB by Protein ID:ENSMUSP00000154529
Original member Current member NCBI NM_134210.1 NP_598971.1 Accepted alive Link to Nucleotide Sequence:NM_134210.1Link to Protein Sequence:NP_598971.1Re-query CCDS DB by Nucleotide ID:NM_134210Re-query CCDS DB by Protein ID:NP_598971Link to BLAST:NP_598971.1

Chromosomal Locations for CCDS 20806.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 12259759 12260679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (921 nt):
ATGAAAATGACTTCTATAAACTTGCCAATGGGAATATTCCTCTTTTCCCAGATTGTAATGGGAATCTTTG
GCAATTCCTCAATACTATTTTATTATGTCATTTTCATATTCAGTGGGAAACATTTAATGCCTAAAGACAT
GATCATAGAGCACTTGACTTTATCCAACTGCTTGTCTCTAATCTCAAAAGGCATTCCACAGACATTGTCT
GATTTTGGATTTAAAAACTTTCTGGATGATATTGGATGCAAAGTGATAATGTATATTTACCGAGTAACAA
GGGGGATGTCCCTGTATGCAATGTGCCTACTGGGTTGTTTCCAAGCAATCACAATCAGTCCCAGCAACTC
CAGATGGATTATGCTTAAACACAGAGCCACAAAGTATATTGGTTCTTCCTGTTTAGTCAGTTGGCTTGTG
AATTTGCTTCTAAACATCATGACGCTAGTAAAAGTGACAGTCCCCACTTACAGCAAAAATGTGACAAACA
CGAATAGTTATGGGTACTGCTCATGGTTTGCTCCAAGCAATCTGGCAACTGCACTGTATATGTTCTTACT
CTGCTTCTGTGATGGCCTGTGTCTAAGTCTCATGGCCTGCTCAAGTGTCTCTATGATGAATATCCTCTAC
AAACATAAGAGACAAGTCAAGCATATCCATAGTGCTCAACACCTTCTGAAAGTCTCGCCTGAGGACAGAG
CTACACAAACTATCCTCATCCTGGTGTGCACATTTATCATCTCTTATACAATCTCTTCTCTACGTGTAAT
CTTTACAACCTACTCCAATGTTTCAGAGATTTGGAGAGTAAGTGTATTTATATTTCTAGAAATATGCTTT
CCCATATTTTGTCCCTTTGTTCTCATCAGCAATATAAAGTGTAGTTTCAGACTATTTTTACCCTTCTGTG
GAAAGAGATAG

Translation (306 aa):
MKMTSINLPMGIFLFSQIVMGIFGNSSILFYYVIFIFSGKHLMPKDMIIEHLTLSNCLSLISKGIPQTLS
DFGFKNFLDDIGCKVIMYIYRVTRGMSLYAMCLLGCFQAITISPSNSRWIMLKHRATKYIGSSCLVSWLV
NLLLNIMTLVKVTVPTYSKNVTNTNSYGYCSWFAPSNLATALYMFLLCFCDGLCLSLMACSSVSMMNILY
KHKRQVKHIHSAQHLLKVSPEDRATQTILILVCTFIISYTISSLRVIFTTYSNVSEIWRVSVFIFLEICF
PIFCPFVLISNIKCSFRLFLPFCGKR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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