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Report for CCDS27707.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27707.2 Public Mus musculus 15 Efcab6 23 108 98 CCDS HistoryNCBI Gene:77627Re-query CCDS DB by CCDS ID:27707.2Re-query CCDS DB by GeneID:77627See the combined annotation on chromosome 15 in Sequence Viewer

Public Note for CCDS 27707.1
The coding region has been updated to extend the N-terminus to one that is more supported by the available transcript and conservation data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 27707.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000156187.7 ENSMUSP00000114909.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000156187.7Link to Ensembl Protein Viewer:ENSMUSP00000114909.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000156187Re-query CCDS DB by Protein ID:ENSMUSP00000114909
Original member NCBI NM_029946.4 NP_084222.4 Updated not alive Link to Nucleotide Sequence:NM_029946.4Link to Protein Sequence:NP_084222.4Re-query CCDS DB by Nucleotide ID:NM_029946Re-query CCDS DB by Protein ID:NP_084222
Current member NCBI NM_029946.5 NP_084222.4 Accepted alive Link to Nucleotide Sequence:NM_029946.5Link to Protein Sequence:NP_084222.4Re-query CCDS DB by Nucleotide ID:NM_029946Re-query CCDS DB by Protein ID:NP_084222Link to BLAST:NP_084222.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_084222.4 1516 Q6P1E8-1 1516 100% 0 0

Chromosomal Locations for CCDS 27707.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 83867049 83867171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 83868239 83868388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 83870836 83871020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 83871152 83871302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 83872196 83872438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 83879431 83879658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 83892763 83892954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 83895952 83896153 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 83899643 83899792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 83904165 83904344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 83913578 83913696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 83918197 83918293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 83924229 83924461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 83933073 83933206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 83935915 83936032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 83945092 83945260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 83946835 83946999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 83947635 83947795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 83947908 83947967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 83949915 83950082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 83952206 83952314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 83954943 83955053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 83967573 83967721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 83973243 83973364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 83983444 83983556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 83988822 83988958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 84010008 84010068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 84018627 84018718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 84032929 84033140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 84044175 84044320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 84054443 84054513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4551 nt):
ATGAAGCGCAACGGCACCAGGCTAAACTTTGCTAAAGCCAACAGCACCAAGTCGGGTAGCACAAGAGCAA
GGGATTTAATGAACAAAATGTCGATTATACCAGAATGGCATAGCTTGTACTCTAACACCCGGAAGCTGCC
ATGTTCCCGTCCCCACTCCTCGCCATGCAAAATGCAGAGAACTATCTTCCAAGATTTATGCAGACCCTCT
TCATCAACCACCGCGATCGCCAACCCAGTTCTGTCCTACTTAGACATTGAACGGATTCTAGCTCAGAAGA
TTTCCAGCAGAAGGGATGACATAAAGAAAGTCTTCCAGATACTCGACCGGAACCACAACCAGATGGTGAC
GAAGGGAGATCTGAAGAGAGTCATCACGGCTTTCCTCATTCCGCTCACCAAAGATCAATTCCAGGACCTG
CTGGCCCAGATCCCGATCAGCAGCTTGGGTAACGTGCCGTACCTTGAATTCCTCTCCAGGTTTGGTGGTG
GAATTGATATAAACATCAATGGTATAAAGAGGGTAAATGAAAACGAGGTAGATAACAGACGAACAGTCAA
AGAAGTCCAACTCACTGAAAAGATCTTCCGGAACATGAGGAGCATCAGGAAAGTCTTCCAGGTCATGGAT
GTCAACAACACAGGCCTGGTGCAGCCCCAGGAGCTGAGGCGCGTTCTGGAGACATTCTGCCTGCGGATGC
AGGATGGTGATTATGAGAAGTTCTTGGAACAGTACAACATCGACAAAACCACTGCAGTGGATTACAATGC
TTTCCTGAAGAATCTCAGTGTTAAAAATGATGCCAGCTTTAAATACCTACTGTCCAATGCGGCAGAACTC
TCAAGGGAGACTCAACAAGGCAAAAATGGCAAGAGGCTGCTCGACACCGGGTCGTCTGAGGATGTCTGGA
AGAACTACTCCTTAGATGACCTGGAGAAGACCTTTTGCCAAGAGTTTTCGAAGTCGTATGAAAAGATCGA
GAAAGCCCTCAGCGCAGGAGACCCCTCCAAAGGTGGCTACATCTCTCTGAATTACCTGAAGGTTGTCCTT
GATACCTTCATATACAGGCTACCGAGGAGAATTTTTATCCAGTTAATAAGAAGATTTGGACTTAAAACCA
GCACGAAAATCAACTGGAAGCAGTTTCTTACAGCAATTTATGAGCGGCAGAAGTTGGAAGTCAGTAAGAC
ACTTCCCCTGAAAAAAAGAAGCAGCACTGAAGCTAGAAACCGGTCTCGCAAGGAAAATATCATCAAGAAG
TTATTCAAGTACTCAGAGGATCGCTATACAGCCCTGAAGAAGACCTTATTAATTATCAGTTCGACGCCCA
GCGGACACATAACTTGGGAAGAACTGCGGCACATTCTAAACTGCATGGTTGCGAAGTTAAACGACTCAGA
ATTCAGTGAGCTGAAGCAGACGTTTGACCCCGAGGGCACTGGAGCAGTGAGGGTCAACTCCCTGTTGGAT
GTACTGGATGACAGCACTAAGGTGAGAAAAATGTCCCCTTCTACAGACACCAAGACACCTCTGCCTGTGG
CTTGGGATTCAGTAGAGGAATTGGTGCTGGACAGCATCACCAGGAACCTCCAGGCCTTTTACAGCATGCT
GCAGTCGTACGACCTTAGGGACACGGGGACCATAGGGAAAAATAACTTCAGGAAAGTCATGCGTGTATTC
TGCCCATATCTATCAAATGAGCACTTAGTAAGATTCTCCAGTAAGTTCCAAGAAGCCGGCTCAGGAAGGA
TACTGTACAAGAAATTTCTGTTATCCATTGGTGTGGGTATCCCACCACCTACACCCCCGCTGTCTTCTCC
GAAGGTTCAGCTAAGTGACCAGTTTCAAATTGAGGAGCCGGGCCAGCAGGATGAGAGAACCCAGCCCTCC
GGGGAAAAAACTTCGGAGATCAACAACATGACCAAGGAAGAAGTCATTGACGGTCTCAAGCACCGGATCC
AGCAGAAGGACCCAGTATTCAGAAAGCAGTTTCTTAGCATCAGCAAGGAACCTGATGTAAAGATCAACCA
AGAGGAATTCCGGAAGGTCCTAGAGAGAAGTGGAATGCCTATGAATGACTGCCAGTATGCGATGCTGGCT
TCCAAGTTAGGCTTCAAGAACGAAGAAGGCATGAGCTATCAGGACTTCACCATGGGATTTGAAGACTGTA
TGCTGAGCGGACTGGAAACTGTCCCATTGCAGTCCCGCACGGCCTCAAGAACGAACATGGATGAGCACTT
CATATCTGCCGAGGAATGCCTGAGAATTTTCCCTAAGAAACTGAAGGAATCCTTCCGGGACGTGTACTCC
GCCTTCTTTAGAATAGACTTGGACAGGGATGGCATTATAAGCATGCACGACTTTCACAGACTGCTGCAGT
ACCTACAGCTCAACATGGTCGACCTCGAGTTTGAGCGCTTCCTCAGCCTCCTGGGCCTGAGACTTAGTGT
CACTCTAAACTTCCGAGAGTTCCAGAACCTGTGTGAGAAGAGGCCCTGGAAATCAGATGAGGCACCTCAA
AGGCTCATCAGATGTAAACAGAAAGTTGCAGATTCAGAGCTAGCCTGTGAGCAGGCTCATCAGTACCTCA
TCATGAAAGCCAAAACCAGATGGGCAGACCTGTCCAAGAATTTCATAGAAACGGATAATGAGGGCAACGG
CATCCTCCGGCGAAGGGACATCAAGAACTCGCTCTATGGCTTTGACATCCCCCTCACCCCAAGAGAATTT
GAGAAGCTTTGGCAAAACTATGACACCGAGGGAAGGGGTTATATCACGTACCAAGAGTTCCTGCACAGAC
TGGGCATTCGATACTCCCCGAAGGTCCACCGGCCCTACAAGGAAGACTACTTCAACTTCCTGGGTCACTT
CACGAAGCCCAAGCAGGTCCAGGAGGAAATCCAGGAGCTACAGCAGATCAGTGAGAGGGAGAAACTCATG
AACCATTATGAGGAGATCAGCAAGGCGTTCAACGCAATGGAAAAATCCAAGCCCGTCGCCCTTTGCAGGG
TGCAGAAGGTGCTACAGGAATGTGGGTGTCCCTTGAAGGAGGAGGAGCTCATCAGCCTTCTGAAGAGCTT
GGACGTCAGTGTGCATAACAATCACATCGACCCTGTCGAATTCCTGAGAGCGCTTGAGATCAGCTGGGCC
AGCAAAGCTCGCCCAAAGGAGAAGGAGGAAAGCTCGCCACCGCCCATCAGCTTCTCTAAGGTGACCCCAG
ATGAGGTGATAAAGACCATGCAGGAGGTGGTGGAGTCCTCCCAGCCTGCTTTGGTGGAGGCCTTCTCTGC
ACTGGATAAAGAGGACACAGGGTTCGTGAAGGCTATGGAATTTGGAGATGTCCTGCGGAGCGTATGCCAA
AAGCTAACGGATAACCAATATCATTACTTCTTGAGGAGATTAAGGCTCCACCTAACACCCAACATACACT
GGAAATACTTCCTGGAGAACTTCAGCACCTTCCAGGACGAGACTGCTGACGACTGGGCAGAGAACATGCC
CAAGGCCCCGCCCCCCATGTCCCCCAAAGAAACAGCCCACAGAGACATCGTGGCACGAGTGCAGAAGGCA
GTAGCGTCTCACTACCACACGATTGTCCAGGAGTTTGAGAACTTCGACACCCTGAAAAGCAACACGGTTT
CCAGAGACGAGTTCAGGTCCATCTGCACCCGCCACATACAGATCCTGACAGACGAGCAGTTTGACAGACT
GTGGAGCGAGCTGCCTGTCAATGCCAAGGGGAGGCTAAAGTACCAGGACTTCCTCAGCAAGTTGAGCATC
GAGAGGGTGCCCTCGCCGCCCATGGCCGCAGGCGACTCTGGAGAATCGACCATGGCCCAGCGGGGAAGCA
GCGCCCCTGAGTTCTCCCAAGGGACCAGGTCCAACCTCTACTCGCCACCTCGGGACTCCAGAGTGGGGTT
GAAATCACGGAGCCACCCCTGTACCCCAGTGGGCACCCCACCCCTACAGAACTGCGAGCCCATCGAGAGC
CGGCTCCGCAAACAGATCCAGGGCTGCTGGCGGGAGCTGCTGAGGGAGTGCAAGGAGAAAGACACGGACA
AGCAGGGGACCATCTCTGCAGCTGAGTTCCTGGCGCTCGTGGAGAAGTTCAAGCTGGACATCAGCAGGGA
GGAGAGCCAGCAGCTCATCGTCAAGTACGACCTGAAGAACAACGGCAAGTTCGCCTACTGCGACTTCATC
CAGAGCTGCGTCCTGCTGCTGAAGGCCAAGGAGACCTCTCTGATGCGGAGGATGAGGATCCAGAATGCGG
ACAAGATGAAAGAAGCTGGCATGGAGACACCTTCCTTTTACTCGGCCTTGCTACGGATCCAGCCTAAGAT
CGTTCACTGCTGGAGGCCCATGCGGCGTTCCTTCAAGACCTACGACAAGAACGGAACGGGACTCCTGAGT
GTGGCTGACTTCAGGAAGGTGCTGCGGCAGTACAGCATTAATCTGTCAGAGGAGGAGTTCTTCCACGTGC
TCGAGTACTATGACAAATCACTGTCTTCGAAGATTTCCTACAATGACTTCCTGCGTGCCTTCCTGCAGTA
G

Translation (1516 aa):
MKRNGTRLNFAKANSTKSGSTRARDLMNKMSIIPEWHSLYSNTRKLPCSRPHSSPCKMQRTIFQDLCRPS
SSTTAIANPVLSYLDIERILAQKISSRRDDIKKVFQILDRNHNQMVTKGDLKRVITAFLIPLTKDQFQDL
LAQIPISSLGNVPYLEFLSRFGGGIDININGIKRVNENEVDNRRTVKEVQLTEKIFRNMRSIRKVFQVMD
VNNTGLVQPQELRRVLETFCLRMQDGDYEKFLEQYNIDKTTAVDYNAFLKNLSVKNDASFKYLLSNAAEL
SRETQQGKNGKRLLDTGSSEDVWKNYSLDDLEKTFCQEFSKSYEKIEKALSAGDPSKGGYISLNYLKVVL
DTFIYRLPRRIFIQLIRRFGLKTSTKINWKQFLTAIYERQKLEVSKTLPLKKRSSTEARNRSRKENIIKK
LFKYSEDRYTALKKTLLIISSTPSGHITWEELRHILNCMVAKLNDSEFSELKQTFDPEGTGAVRVNSLLD
VLDDSTKVRKMSPSTDTKTPLPVAWDSVEELVLDSITRNLQAFYSMLQSYDLRDTGTIGKNNFRKVMRVF
CPYLSNEHLVRFSSKFQEAGSGRILYKKFLLSIGVGIPPPTPPLSSPKVQLSDQFQIEEPGQQDERTQPS
GEKTSEINNMTKEEVIDGLKHRIQQKDPVFRKQFLSISKEPDVKINQEEFRKVLERSGMPMNDCQYAMLA
SKLGFKNEEGMSYQDFTMGFEDCMLSGLETVPLQSRTASRTNMDEHFISAEECLRIFPKKLKESFRDVYS
AFFRIDLDRDGIISMHDFHRLLQYLQLNMVDLEFERFLSLLGLRLSVTLNFREFQNLCEKRPWKSDEAPQ
RLIRCKQKVADSELACEQAHQYLIMKAKTRWADLSKNFIETDNEGNGILRRRDIKNSLYGFDIPLTPREF
EKLWQNYDTEGRGYITYQEFLHRLGIRYSPKVHRPYKEDYFNFLGHFTKPKQVQEEIQELQQISEREKLM
NHYEEISKAFNAMEKSKPVALCRVQKVLQECGCPLKEEELISLLKSLDVSVHNNHIDPVEFLRALEISWA
SKARPKEKEESSPPPISFSKVTPDEVIKTMQEVVESSQPALVEAFSALDKEDTGFVKAMEFGDVLRSVCQ
KLTDNQYHYFLRRLRLHLTPNIHWKYFLENFSTFQDETADDWAENMPKAPPPMSPKETAHRDIVARVQKA
VASHYHTIVQEFENFDTLKSNTVSRDEFRSICTRHIQILTDEQFDRLWSELPVNAKGRLKYQDFLSKLSI
ERVPSPPMAAGDSGESTMAQRGSSAPEFSQGTRSNLYSPPRDSRVGLKSRSHPCTPVGTPPLQNCEPIES
RLRKQIQGCWRELLRECKEKDTDKQGTISAAEFLALVEKFKLDISREESQQLIVKYDLKNNGKFAYCDFI
QSCVLLLKAKETSLMRRMRIQNADKMKEAGMETPSFYSALLRIQPKIVHCWRPMRRSFKTYDKNGTGLLS
VADFRKVLRQYSINLSEEEFFHVLEYYDKSLSSKISYNDFLRAFLQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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