NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS49084.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49084.1 Public Mus musculus 12 Ccdc175 23 108 98 CCDS HistoryNCBI Gene:73936Re-query CCDS DB by CCDS ID:49084.1Re-query CCDS DB by GeneID:73936See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49084.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021494.5 ENSMUSP00000021494.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021494.5Link to Ensembl Protein Viewer:ENSMUSP00000021494.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000021494Re-query CCDS DB by Protein ID:ENSMUSP00000021494
Original member Current member NCBI NM_028687.1 NP_082963.1 Accepted alive Link to Nucleotide Sequence:NM_028687.1Link to Protein Sequence:NP_082963.1Re-query CCDS DB by Nucleotide ID:NM_028687Re-query CCDS DB by Protein ID:NP_082963Link to BLAST:NP_082963.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082963.1 822 E9PVB3 822 100% 0 0

Chromosomal Locations for CCDS 49084.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 72101407 72101420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 72101928 72102056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 72105804 72105987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 72106654 72106697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 72109076 72109178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 72112169 72112321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 72114259 72114338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 72117885 72118023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 72128275 72128406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 72129086 72129221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 72131068 72131139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 72135961 72136071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 72139897 72140033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 72144766 72144847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 72155567 72155676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 72157423 72157545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 72159751 72159979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 72175056 72175191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 72178527 72178638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 72180765 72180850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 72184827 72184983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2469 nt):
ATGGCCATACGCTCCTGGACCCCCGAGGGGTTTGTCAACAAGAAGTTGGTGCGGCCAGCCTCGGTCTCCA
CAAACCTGTCCCTCGAGCTATGCACCTTCCCCACAACCTTGGGCTCCTCGGTAGCGGCCAATGCGCTAGA
GCAGCTCTTCGTTGTAGAAAAATCTCTGCAAGGGGACTATTTCACATGCAGTGAAGAAGTTAAGACCTTT
CTTAAGGACATTACTGTAGCTGTTAAAAAACTGGAAGAAATGCGGAAAAACACGGTGGAACTGCTGGAGA
TTGAAAGCATGGAGCTGAGCCGACTTTACTTTCTGCTGGAGACTGTGCCCAACAGCATACACAGGGAGCT
GGAAGAATGTATTGCAGATGCTCGCAAACTCAATATCATTGAGATAAGTCAAATAAAAAGAAAGATTGAG
ACGATGAATAATGAAGTAAAATTTCTAACCAACAAAATAAGTGAGCTGAAGAGCATGAATGAAGTTCTGG
GTGCAAAGCAAGCAGAGCTGGCGAAGAGGCATGAACAGTATGTCCTGCTGCTGAACCAAACCTTGGAAGA
GAAAGCCGCCGCCACTATTTACATAAATGACACTTATACCAGAATGAACTTTGAGAGAGAAGAAATAGAA
CTCCAAAAACAATGTATGCAAGAGACAACTCAATTAATAGAAAAACAGAAACAAGATTATTTGGAAAAGA
AAGAATATCTGGCTATCCGCATTAAAGAGACAAAGCAATCCTGTGACGATAAGAGAAAAGAGACATATTA
TAAGAAGAAAGAATTGACCAGATTACAAAATAAAATAATAAAAATGAAGCAAACAGTTACTTCCGGCTCA
GTGATGATTTCTGACCAAAGTATAGAGATAAACATACTACACGAAGCAATAACTATTTGGAAGAAAAAGG
TAGAAGATATGAGGAGACTGTGTGAAAGTTTGGAGGAAAAACTGTCATTTTTTGTGACTCAAAAGCAAAA
TCTGGATACTACATCTACTGAGAAGAAGAATGCATTCGTGAATAAAATACAGAAGTTGGGTGAAAAAATA
TACAAACTTAATACAGAGAACGAAGATCTCCGAGAGAAACTGAGCACACTCCTCAAACAGTATAAGGCTA
CCTTGAAGGAAGAGGAAGCTGTGAGTCTGAAGAAACAGATGTTGTCAGAAGAACATCAGAAACAGATGAT
GGTTATTACTCAGAAAGAAGCCTTCCTATCACAAAGAGAACATGACATCAAATTTATGGAAAACGGATTT
GGAGTCCTTAATGATCTTAATAGAGCATCACGGGAAGCATATGGAAGACAAATAGAAGTCATGGCTAAAA
ATCGGCAAAGAGAAATTCAGAGATGTGTCATAAATCAGTGGAGAATATTCTGTACGAGAAAAAGACACGC
ACATTGGCTACAGAAGATAAAGCTGTCCTTGAAAAAAATTATAATTCAAATTGAGATTGTAGAGCAAAAG
CGATTTCAATTGCTTGAAGAGACGAAGCATAGAAAGAAGGAGATTAATCATTTTGTGCACCTAATTGAAA
CACTTAAGGAGCAGCTAGCGCAAGACAAGAAGGACTATGTCAAAAAAGAAGAAAGGTTAATCGAAGAACT
AGGCACCTATGAGACTCTAATCTTAAACGAGATCCAGATTAACAAAGTGAAAGAAGAGGAGCTAGGTGAA
ACCCTCCCACAGCTTCAGGTAGCAGAAGAGGACTTCAGAGAAAAAAACAGGATGCTCAGGTCCCTCCACA
GTGACGTTTCAGCAAAGAAGCAAGACGAGAAAACGATGAGCAACACCATTTTCCGCTATAGAAAGGACAT
CATCAGATGTACAGACGGCACGGAAAATATGAAGCGAGAAATAAAACACTTACGAGACCTTGAAAGTGAG
AAAACCCACAAACATTTTGAAATTCTAAAGAACTTAGAAAATGAAATCTATGTAAATGACCAAAAGATGG
CCCTTCTCATCCTGGAAAATCAAAAATTAAGAGAATACCTTGCCTACCTGAAGAAAGAAATCAATGAATA
CGCGTCAAAGCAAGTAGTGACTGTACAGCACTCAGGTGACCTCTCTTGGCAACTGATAGTTCAGCACTCA
CACTATTCAGATCTGCTGTCAGGATTTCAGATCATAATTAAGGAACTGGTGGGCACCGGAGAAGACACTA
TGCAAGAAATTAAGTCTCTGGTGGCGAAGCTGCAGTACAGGGATGAGAAAATTGAGTCCATCAGCACCTG
GCTCGTGGGGGGATTCGAAAGGCTGCGTCGTCTTATGGAAGAGGACTCACCGGCCAGCCTTAGTAAAGAG
GATCTCCAGAAGCTCGGAAAGAAGCAAAAGAATCAAGAAATACTTCGTTTTTCCCCATCCTCTCATGCTA
GGAGACTCACATTAAGCAGGATCTGCAAAATGTTAAAGAAACAATCAAGAAGCCGGAAGAAGAAGCACAG
GCCACGAACAATAATCTGA

Translation (822 aa):
MAIRSWTPEGFVNKKLVRPASVSTNLSLELCTFPTTLGSSVAANALEQLFVVEKSLQGDYFTCSEEVKTF
LKDITVAVKKLEEMRKNTVELLEIESMELSRLYFLLETVPNSIHRELEECIADARKLNIIEISQIKRKIE
TMNNEVKFLTNKISELKSMNEVLGAKQAELAKRHEQYVLLLNQTLEEKAAATIYINDTYTRMNFEREEIE
LQKQCMQETTQLIEKQKQDYLEKKEYLAIRIKETKQSCDDKRKETYYKKKELTRLQNKIIKMKQTVTSGS
VMISDQSIEINILHEAITIWKKKVEDMRRLCESLEEKLSFFVTQKQNLDTTSTEKKNAFVNKIQKLGEKI
YKLNTENEDLREKLSTLLKQYKATLKEEEAVSLKKQMLSEEHQKQMMVITQKEAFLSQREHDIKFMENGF
GVLNDLNRASREAYGRQIEVMAKNRQREIQRCVINQWRIFCTRKRHAHWLQKIKLSLKKIIIQIEIVEQK
RFQLLEETKHRKKEINHFVHLIETLKEQLAQDKKDYVKKEERLIEELGTYETLILNEIQINKVKEEELGE
TLPQLQVAEEDFREKNRMLRSLHSDVSAKKQDEKTMSNTIFRYRKDIIRCTDGTENMKREIKHLRDLESE
KTHKHFEILKNLENEIYVNDQKMALLILENQKLREYLAYLKKEINEYASKQVVTVQHSGDLSWQLIVQHS
HYSDLLSGFQIIIKELVGTGEDTMQEIKSLVAKLQYRDEKIESISTWLVGGFERLRRLMEEDSPASLSKE
DLQKLGKKQKNQEILRFSPSSHARRLTLSRICKMLKKQSRSRKKKHRPRTII


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH