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Report for CCDS29016.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29016.1 Public Mus musculus 17 Ttc7 23 108 98 CCDS HistoryNCBI Gene:225049Re-query CCDS DB by CCDS ID:29016.1Re-query CCDS DB by GeneID:225049See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29016.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000041110.11 ENSMUSP00000040771.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000041110.11Link to Ensembl Protein Viewer:ENSMUSP00000040771.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000041110Re-query CCDS DB by Protein ID:ENSMUSP00000040771
Original member NCBI NM_028639.3 NP_082915.1 Updated not alive Link to Nucleotide Sequence:NM_028639.3Link to Protein Sequence:NP_082915.1Re-query CCDS DB by Nucleotide ID:NM_028639Re-query CCDS DB by Protein ID:NP_082915
Current member NCBI NM_028639.4 NP_082915.1 Accepted alive Link to Nucleotide Sequence:NM_028639.4Link to Protein Sequence:NP_082915.1Re-query CCDS DB by Nucleotide ID:NM_028639Re-query CCDS DB by Protein ID:NP_082915Link to BLAST:NP_082915.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082915.1 858 Q8BGB2 858 100% 0 0

Chromosomal Locations for CCDS 29016.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 87283224 87283410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 87290189 87290352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 87292811 87292979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 87306929 87307059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 87308729 87308844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 87321403 87321481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 87322438 87322595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 87323124 87323187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 87329323 87329460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 87330025 87330108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 87334267 87334371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 87339891 87340008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 87340888 87340945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 87342067 87342139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 87346541 87346701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 87359114 87359230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 87361849 87361943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 87363456 87363590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 87370459 87370661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 87379849 87380070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2577 nt):
ATGGCTGCGAAGGGCGCGCACGGCACCCACCTGAAGGTGGAGAGCGAGGTGGAGCGCTGCCGCGCCGAGG
GCCAGTGGGACCGCATGTTCGAGCTGGCCCGGCATCTGCAGATGCTGGGCATTTCCGGCGGCGGCAGTAG
CAACCGGCGAAACAGCCCGAGCGGCAGGTTCACCACTCTGGACACCGATGACTTTGTGAAATTGCTGCTA
GCGGAGGCCCTCCTGGAGCAGTGTCTGAAGGATAACCACGACAAAATAAAAAACTCCATCCCTTTGCTGG
AGAAGACTGATCACAGGCTGAATGAAGCCAAGGACCACCTGAGCAGCCTCCTCAACAATGGGAAACTGCC
GCCACAGTACATGTGTGAAGCCATGCTGATCCTGGGCAAGCTGCACTATGTGGAGGGCTCGTACCGGGAC
GCTGTCAGCATGTATGCACGGGCTGGGATCGATGACATATCCGTGGAGAACAAGCCCCTGTATCAGATGC
GGTTGCTGTCGGAGGCCTTTGTCATCAAAGGCCTCTCCCTGGAACGCCTGCCCAACTCCGTCGCCTCCCA
CATCCGCCTGACTGAGCGGGAGGAGGAAGTGGTTGCCTGTTTTGAGAGGGCCTCTTGGGTGGCTCAGGTA
TTCCTGCAGGAGCTGGAGAAGACCTCAAACAACAGCACATCAAGACACCTGAAAGGCAGCCTCTCGCCTG
ACTATGAGCTGTCCTACTTCCTGGAAGCTGCCCTCCAGAGCGCATATGTGAAGAACCTGAAAAAGGGGAA
TATTGTGAAAGGCATGAGGGAGCTCCGGGAGATTCTGAGGACTGTGGAGACCAAAGCGACACAGAACTTC
AAAGTGGTGGCCGCCAAGCACCTGGCAGGGGTCCTGCTGCACTCCCTGAGCGAGGACTGTTACTGGAGCC
CCCTGTCCCACCCTTTGCCTGAGTTCATGAACAAGGAGGAGAACTCTTTTGTCACTCAGACTCTTCGGAA
ACCTCACCTCTACGAAGGGGACAACCTCTACTGCCCCAAAGACAACATAGAGGAGGCCCTCTTGCTGCTG
CTCATCAGTGAGTCCATGGCAACTCGGGACGTGGTACTGAGTCGGGCACCAGAGCAGGCGGAGGACCGGA
AAGTGAGCCTGCAGAATGCTTCAGCCATTTATGACCTCCTGAGCATCACGCTGGGCCGGCGAGGCCAGTA
TGTCATGCTATCAGAGTGCCTAGAGCGAGCCATGAAGTGTGCTTTTGGAGAATTTCACCTTTGGTACCAA
GTGGCCCTCTCCATGGTGGCTTGTGGGAAGTCAGCCTACGCCGTGTCGCTGCTGCGTGAGTGCATGAAGT
TGCAGCCCTCGGACCCCACGGTACCCCTGATGGCTGCCAAGGTCTGCATTGGGTCCCTGCATTGGCTAGA
AGAGGCAGAACACTTTGCCACGGTAGTAATTGGTCTTGGAGAGGAAGCTGGAGAGTCCCTGCCTAAAGGC
TACCTGGCCCTGGGCCTCACCTACAGCCTGCAGGCCACTGATGCCACCCTGAAGTCCAAGCAAGATGAGC
TTCACCGCAAGGCACTGCAGACACTGGAGAGAGCCCGGGAACTGGCACCCGATGATCCCCAAATTATCTT
CTATGTCGCCCTGCAGCTGGCCCTCGTCCGACAGATCTCCAGCGCCATGGAGCGTCTTCAGGAGGCCCTG
ACGATGTGCAGGGATGATGCCAATGCCCTCCACTTGCTAGCGCTGCTCTTCTCTGCCCAGAAGTATTACC
AGCACGCCCTGGACGTCATCAATATGGCCATCACCGAGCATCCTGAAAATTTCAACCTGATGTTCACCAA
GGTGAAGCTGGAGCAGGTACTGAAAGGCCCGGAGGAAGCCCTCGTGACTTGCAGACAAATGCTGCGGCTG
TGGCAGACCCTCTACAACTTCTCTCAGCTGGGGGGCCTGGAAAAGGATGGCAGCTTTGAAGGCCTCACAG
TGAAGAAACAGAACGGTATCCACCTGACTCTGCCAGATGCCCATGATGCAGACTCTGGCTCTAGGCGGGC
GTCGTCTATCGCAGCCTCAAGGCTGGAAGAGGCCATGTCGGAATTAACCTTAACAACCTCAGTCCTGAAG
CAGGGCCCCATGCAGCTCTGGACCACACTGGAGCAGATCTGGCTCCAGGCCGCTGAGCTGTTCATGGAGC
AGAGACAACTCAAGGAAGCGGGTTTCTGCATCCAGGAGGCTGCTGGCCTCTTCCCCACCTCTCACTCGGT
ACTCTACATGCGAGGCCGACTAGCTGAGGTGAAGGGCAGCTTCGAAGAGGCCAAGCAGCTGTACAAGGAG
GCTCTCACCGTAAACCCGGACGGCGTGCGCATCATGCACAGCCTGGGTCTGATGCTGAGTCAGCTGGGCC
ACAAGAGCCTGGCCCAGAAGGTGCTGCGGGATGCTGTGGAGAGACAGAGCACCTTCCACGAAGCGTGGCA
GGGCCTGGGGGAGGTGCTGCAGGACCAAGGCCAGAACGAAGCGGCCGTGGACTGCTTCCTCACAGCCCTG
GAGCTGGAGGCCAGCAGCCCTGTGCTGCCCTTCTCCATCATTGCCAGAGAGCTGTGA

Translation (858 aa):
MAAKGAHGTHLKVESEVERCRAEGQWDRMFELARHLQMLGISGGGSSNRRNSPSGRFTTLDTDDFVKLLL
AEALLEQCLKDNHDKIKNSIPLLEKTDHRLNEAKDHLSSLLNNGKLPPQYMCEAMLILGKLHYVEGSYRD
AVSMYARAGIDDISVENKPLYQMRLLSEAFVIKGLSLERLPNSVASHIRLTEREEEVVACFERASWVAQV
FLQELEKTSNNSTSRHLKGSLSPDYELSYFLEAALQSAYVKNLKKGNIVKGMRELREILRTVETKATQNF
KVVAAKHLAGVLLHSLSEDCYWSPLSHPLPEFMNKEENSFVTQTLRKPHLYEGDNLYCPKDNIEEALLLL
LISESMATRDVVLSRAPEQAEDRKVSLQNASAIYDLLSITLGRRGQYVMLSECLERAMKCAFGEFHLWYQ
VALSMVACGKSAYAVSLLRECMKLQPSDPTVPLMAAKVCIGSLHWLEEAEHFATVVIGLGEEAGESLPKG
YLALGLTYSLQATDATLKSKQDELHRKALQTLERARELAPDDPQIIFYVALQLALVRQISSAMERLQEAL
TMCRDDANALHLLALLFSAQKYYQHALDVINMAITEHPENFNLMFTKVKLEQVLKGPEEALVTCRQMLRL
WQTLYNFSQLGGLEKDGSFEGLTVKKQNGIHLTLPDAHDADSGSRRASSIAASRLEEAMSELTLTTSVLK
QGPMQLWTTLEQIWLQAAELFMEQRQLKEAGFCIQEAAGLFPTSHSVLYMRGRLAEVKGSFEEAKQLYKE
ALTVNPDGVRIMHSLGLMLSQLGHKSLAQKVLRDAVERQSTFHEAWQGLGEVLQDQGQNEAAVDCFLTAL
ELEASSPVLPFSIIAREL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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