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Report for CCDS17991.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17991.1 Public Mus musculus 4 Cpne3 23 108 98 CCDS HistoryNCBI Gene:70568Re-query CCDS DB by CCDS ID:17991.1Re-query CCDS DB by GeneID:70568See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17991.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029885.4 ENSMUSP00000029885.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029885.4Link to Ensembl Protein Viewer:ENSMUSP00000029885.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000029885Re-query CCDS DB by Protein ID:ENSMUSP00000029885
Original member Current member NCBI NM_027769.3 NP_082045.1 Accepted alive Link to Nucleotide Sequence:NM_027769.3Link to Protein Sequence:NP_082045.1Re-query CCDS DB by Nucleotide ID:NM_027769Re-query CCDS DB by Protein ID:NP_082045Link to BLAST:NP_082045.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082045.1 533 Q8BT60 533 100% 0 0

Chromosomal Locations for CCDS 17991.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 19523184 19523294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 19525003 19525239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 19526284 19526417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 19528060 19528111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 19528188 19528242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 19532399 19532532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 19533055 19533114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 19535212 19535298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 19536527 19536625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 19540741 19540830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 19543254 19543337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 19550588 19550659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 19552244 19552318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 19553718 19553897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 19555362 19555493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1602 nt):
ATGGCTGCCCAGTGTGTCACGAAGGTGGAACTAAATGTTTCCTGTAACAACCTTTTGGATGCAGATGTAA
CATCAAAGTCGGACCCTTTATGTGTGCTGTTTTTGAATACGAGTGGTCACCAGTGGTATGAGGTTGAACG
GACAGAAAGGATTAAGAATTCTTTGAATCCCAAATTTTCTAAGACATTTGTTATTGATTACTACTTTGAA
GTGGTTCAGAAATTGAAGTTTGGAATCTATGACATTGACAACAAAACTATCGAGCTGAGTGATGATGACT
TCTTGGGAGAATGTGAAGTCACTCTTGGACAAATTGTTTCCAGTAAGAAGCTAACTCGACCACTGGTGCT
CAAAAATGGCAAACCTGCAGGGAAAGGGAGTATTACGATTTCAGCAGAAGAAATAAAGGATAACAGAGTG
GTATTGTTTGAAATGGAAGCCAGAAAACTGGATAATAAGGATCTGTTTGGGAAGTCAGATCCATACTTGG
AGTTTCACAAGCAGACATCAGATGGCCACTGGCTGATGGTTCACCGAACAGAGGTTATAAAAAACAACCT
GAATCCCATGTGGAAGCCTTTTAAGATCTCTCTTAACTCTCTGTGCTATGGAGATATGGACAAAACCATT
AAGGTAGAGTGTTATGATTATGACAATGATGGATCGCATGATCTCATTGGAACATTTCAAACCACCATGA
CAAAACTCAAAGAAGCCTCCAGAAGCTCACCTGTTGAATATGAATGCATAAATGAAAAAAAGAGACAGAA
GAAAAAAAGCTACAAGAACTCAGGTGTTATCAGTGTGAAGCACTGTGAGATTACTGTAGAATGCACATTT
CTTGACTACATCATGGGAGGGTGCCAGCTCAATTTTACTGTGGGAGTGGACTTCACCGGCTCCAATGGTG
ACCCCAGTTCTCCAGACTCCCTGCATTACATCAGCCCGAATGGTGTTAATGAGTATCTGACTGCCATCTG
GTCTGTAGGATTGGTAATTCAAGATTATGATGCTGATAAAATGTTTCCAGCTTTTGGCTTTGGAGCTCAG
GTGCCCCCTCAGTGGCAGGTATCTCATGAATTTCCGATGAACTTTAACCCATCGAACCCCTATTGCAATG
GAATCCAAGGCATTGTAGAGGCTTATCGGACCTGTCTTCCCCAGATAAGACTCTATGGACCAACTAATTT
TTCTCCAATTATAAATCACGTGGCCAGGTTTGCAGCTGCAGCCACACAACAGCAGACAGCTTCTCAATAC
TTTGTGCTCTTAATCATCACTGATGGCGTGATCACAGACCTTGATGAAACCAGACAGGCAATCGTCAATG
CAGCCAAGCTGCCCATGTCTATCATCATTGTGGGAGTTGGGGGAGCTGACTTCAGTGCCATGGAGTTTCT
AGATGGCGATGGTGGAAGTCTCCGTGCCCCTTCAGGAGAGGTGGCCATAAGAGATATTGTTCAGTTTGTG
CCTTTCAGACAGTTCCAGAATGCTCCAAAAGAAGCGCTTGCTCAGTGTGTCTTGGCAGAGATTCCCCAGC
AGGTGGTGGGCTACTTCAACACATACAAACTCCTTCCTCCCAAAAACCCAGCTGTGAAGTAG

Translation (533 aa):
MAAQCVTKVELNVSCNNLLDADVTSKSDPLCVLFLNTSGHQWYEVERTERIKNSLNPKFSKTFVIDYYFE
VVQKLKFGIYDIDNKTIELSDDDFLGECEVTLGQIVSSKKLTRPLVLKNGKPAGKGSITISAEEIKDNRV
VLFEMEARKLDNKDLFGKSDPYLEFHKQTSDGHWLMVHRTEVIKNNLNPMWKPFKISLNSLCYGDMDKTI
KVECYDYDNDGSHDLIGTFQTTMTKLKEASRSSPVEYECINEKKRQKKKSYKNSGVISVKHCEITVECTF
LDYIMGGCQLNFTVGVDFTGSNGDPSSPDSLHYISPNGVNEYLTAIWSVGLVIQDYDADKMFPAFGFGAQ
VPPQWQVSHEFPMNFNPSNPYCNGIQGIVEAYRTCLPQIRLYGPTNFSPIINHVARFAAAATQQQTASQY
FVLLIITDGVITDLDETRQAIVNAAKLPMSIIIVGVGGADFSAMEFLDGDGGSLRAPSGEVAIRDIVQFV
PFRQFQNAPKEALAQCVLAEIPQQVVGYFNTYKLLPPKNPAVK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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