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Report for CCDS52059.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52059.1 Public Mus musculus 7 Nkpd1 23 108 98 CCDS HistoryNCBI Gene:69547Re-query CCDS DB by CCDS ID:52059.1Re-query CCDS DB by GeneID:69547See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52059.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000078908.4 ENSMUSP00000077943.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000078908.4Link to Ensembl Protein Viewer:ENSMUSP00000077943.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000078908Re-query CCDS DB by Protein ID:ENSMUSP00000077943
Original member Current member EBI ENSMUST00000207576.1 ENSMUSP00000147092.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000207576.1Link to Ensembl Protein Viewer:ENSMUSP00000147092.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000207576Re-query CCDS DB by Protein ID:ENSMUSP00000147092
Original member NCBI NM_027116.1 NP_081392.1 Updated not alive Link to Nucleotide Sequence:NM_027116.1Link to Protein Sequence:NP_081392.1Re-query CCDS DB by Nucleotide ID:NM_027116Re-query CCDS DB by Protein ID:NP_081392
NCBI NM_027116.2 NP_081392.1 Updated not alive Link to Nucleotide Sequence:NM_027116.2Link to Protein Sequence:NP_081392.1Re-query CCDS DB by Nucleotide ID:NM_027116Re-query CCDS DB by Protein ID:NP_081392
Current member NCBI NM_027116.3 NP_081392.1 Accepted alive Link to Nucleotide Sequence:NM_027116.3Link to Protein Sequence:NP_081392.1Re-query CCDS DB by Nucleotide ID:NM_027116Re-query CCDS DB by Protein ID:NP_081392Link to BLAST:NP_081392.1

Chromosomal Locations for CCDS 52059.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 19518731 19518821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19519802 19520251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19521934 19522065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19522971 19524775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2478 nt):
ATGCAGAAGAACTACAATGTGCACTTCACCAAGAACGCCCGGACCCCCAATGAACGATACCTTTTGGATC
CCGAGTTGGGGCACCAAAAAGGATGCTGCCGTCAGTGGTACCAGGACCCGGTGGCCACTCACACCCATGG
GCCCTATCAGCTGTCCCCCCAGGCTCACTGGCAGCAGACCTACCATAGCCACCGAGGTGGCAGCGGCTGT
CGCCGGTGTCCCCAGCCCCTCATTCCGCAGCGACAGCGGCGGCAGCAGCAGCAGCGACAACCCCCACCCC
TACCTCCCAGCCCTCTGCGGCAGCGGCTCGGTCCAGTTCGCGGGGCCCAGAAGGGGTCACCCGCGATCGC
CGCTGCCCGCATGGAACCAGCCAGCGCCCCCAAGCCTGTCACCTCCACACCCACCGCAGTATCAGCCACG
GCCAGCAGCGGCCCAGCCCTACCCTCTGCAGCCGGCGCCCTCCTGGAGCCCAGCGAGCCCACCGAGGCGC
GGCCACTGCCTGCACCGGCAGCCTGCGGCTCCTTCACCTCCTACGGCGCCGACATCCTGACAGAGGATGA
TGTCTACTGCAGCTGTCTGGCTAAAACTCTGTGTCACGTGCCCGTCCCTGTGACGGTGGGTTTCTACGCT
CCCTTCGGCTGCCGTCTTCACTTGATGTTGGATAAAATCATGACGCTGATGCAGCAGGAGGCCGCGCAGC
GTGAGAGCGAGGAGCTGCAGCGCGTGCAGTGGCAGCCACGTCGCGTGCGCGGCTGGGGCGTCCCGAAGCT
GCTGTGGTTCCTGGTGTTTCTGCAGCCCGTGATCACGGAGCTGCACCTGCGGCGCAGGAATGTGCGCTTC
CTGTTCATCCGCTTCAGCGCCTGGCAGTACGCGGGCACCGACAAGCTGTGGGCCGGGCTGGTGACCACGC
TGTGTGAGGGCATCCGCCACCACTACGGCGCGCTGCCCTTTAGCGTGTACTCGGTGCTAGGCAACAAGCC
CTGTGGCCCGCGTGATGGCCTCTGCCAACGCGAGTGGCACTGCCGACGTCGCGTGTGCCTGGCGCTGCTG
GCGCTGCTGGCCGCGCTGTGCCTGGGTGTGGGGCTGCTGTACCTGTCGCTGGGAGGCCACGCGCCGGGCC
ACGGAGAGCGTGGTGTGCTCAAAGCGCTGGGCGGCGCGGCCACCACGCTATCCGGCTCAGGGCTGCTCAT
GGCCGTGTACTCCGTGGGCAAGCATCTGTTCGTGAGCCAGCGCAAGAAGATCGAGCGCCTGGTGTCGCGT
GAGAAGTTTGGCAGCCAGTTGGGCTTCATGTGCGAGGTGAAGAAGGAGGTGGAACTGCTCACGGATTTCC
TGTGCTTCCTGGAGATCTACCAGCGACGCCGGCTGCGTGTGGTCCTCGAGGTCACTGGGTTGGACACGTG
CTACCCAGAGCGCGTGGTGGGCGTCCTAAACGCCATCAACACTCTGCTGTCCGACAGCCACGCTCCCTTC
ATCTTCATCCTGGTGGTGGACCCCAGCATTCTGGCCGCGTGCCTGGAGAGCGCGGGTAACATGAAGGGCA
CAGCAGACAACGGCTACCTGTTCCTCAACCGCACAGTCACGCTACCCTTCTCCGTGCCGATTATGGGCCG
TCGCACCAAGTTGCAGTTCCTGCACGATGCGGTGCGTAGCCGGGACGATCTGCTGTTCCGGGAATTGACG
ATCAAGCTACAGCCGCAGAGCCCCGGGAACTTGGGCGCAGGTGAGGGTACTCAGCTGCTGGCGGTGGAGA
CGCAGGGGGACGCCGAGCGCACACAGGGCCGCGTGGACGCGGAGGCGGCGCGGCGTATCCAGGAGGCGCT
GTGCTGCCTGCATGACGAGGGTGATTGCCTGTATGAGTACGTGCCCGACAACGTGGTGTCCATGCGGCGC
ATTGTCAACACGGTGCCCATCACCGTGCGCCTGTTGCAGCAGCAGCAGCAGCAACAGCCCGACCGCGTGG
GACCCACACCGCGCCACGCGGTGGCCTGGGTCGTCCTCGCTAACCAGTGGCCTTGTCGCCTCAGCTGGGT
GCTGCAATGCCTGGAGGACCGGCAGCAGGCAGGGGGCGCGCCAGAGGGGCGCTCGCGTCTCTGGGATGTC
TTCTGCGACAATAGTCGCGAGCTGCACACCATGACCAAGGCCTTGCAGAACGTACTGGACCTGGATGGCG
ACCCTGAGCTTTTTGAGCGCTTTCTAGGCACTGATTTCCCCTTCACCGTGGCCGAGGCGCAGAGTTTGCT
GCGCTGCACAGTCAACCTGGACCATTCCATCCGCCGCCGCATGGGCCTCATCAGGGCCGTCAGCGCGCTC
AAGCCGCCCAGCCCACCCAAGTCCCCATCCCAGGACGGTCCCCAGGCCAGTCCCAGAGCCATTATCGCCG
CAGGCACGTCCCATGCGGGCCAAGGATCAGGACACAGTAAAGAGGCACATCAGACCCGGGACCGGACCCA
TGGGGGCAAGCCAAGGCCGATGGCCTAA

Translation (825 aa):
MQKNYNVHFTKNARTPNERYLLDPELGHQKGCCRQWYQDPVATHTHGPYQLSPQAHWQQTYHSHRGGSGC
RRCPQPLIPQRQRRQQQQRQPPPLPPSPLRQRLGPVRGAQKGSPAIAAARMEPASAPKPVTSTPTAVSAT
ASSGPALPSAAGALLEPSEPTEARPLPAPAACGSFTSYGADILTEDDVYCSCLAKTLCHVPVPVTVGFYA
PFGCRLHLMLDKIMTLMQQEAAQRESEELQRVQWQPRRVRGWGVPKLLWFLVFLQPVITELHLRRRNVRF
LFIRFSAWQYAGTDKLWAGLVTTLCEGIRHHYGALPFSVYSVLGNKPCGPRDGLCQREWHCRRRVCLALL
ALLAALCLGVGLLYLSLGGHAPGHGERGVLKALGGAATTLSGSGLLMAVYSVGKHLFVSQRKKIERLVSR
EKFGSQLGFMCEVKKEVELLTDFLCFLEIYQRRRLRVVLEVTGLDTCYPERVVGVLNAINTLLSDSHAPF
IFILVVDPSILAACLESAGNMKGTADNGYLFLNRTVTLPFSVPIMGRRTKLQFLHDAVRSRDDLLFRELT
IKLQPQSPGNLGAGEGTQLLAVETQGDAERTQGRVDAEAARRIQEALCCLHDEGDCLYEYVPDNVVSMRR
IVNTVPITVRLLQQQQQQQPDRVGPTPRHAVAWVVLANQWPCRLSWVLQCLEDRQQAGGAPEGRSRLWDV
FCDNSRELHTMTKALQNVLDLDGDPELFERFLGTDFPFTVAEAQSLLRCTVNLDHSIRRRMGLIRAVSAL
KPPSPPKSPSQDGPQASPRAIIAAGTSHAGQGSGHSKEAHQTRDRTHGGKPRPMA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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