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Report for CCDS19242.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19242.1 Public Mus musculus 5 Mrfap1 23 108 98 CCDS HistoryNCBI Gene:67568Re-query CCDS DB by CCDS ID:19242.1Re-query CCDS DB by GeneID:67568See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19242.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000068795.3 ENSMUSP00000067135.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000068795.3Link to Ensembl Protein Viewer:ENSMUSP00000067135.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000068795Re-query CCDS DB by Protein ID:ENSMUSP00000067135
Original member Current member NCBI NM_026242.3 NP_080518.1 Accepted alive Link to Nucleotide Sequence:NM_026242.3Link to Protein Sequence:NP_080518.1Re-query CCDS DB by Nucleotide ID:NM_026242Re-query CCDS DB by Protein ID:NP_080518Link to BLAST:NP_080518.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080518.1 125 Q9CQL7 125 100% 0 0

Chromosomal Locations for CCDS 19242.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 36796216 36796593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (378 nt):
ATGCGGCCCCTGGACGCGGTGGAGCTGGCGGAGCCCGAGGAGGTGGAGGTGCTGGAGCCCGAGGAGGACT
TCGAGCAGTTTCTGCTGCCCGTCATCCACGAGATGCGCGAGGACATCGCGTCGCTGACGCGCGAGCGCGG
GCGCGCGCCGGCGCGCAACCGGGGCAAGCTGTGGGAGATGGACAATATGCTGATCCAGATCAAGACGCAG
GTCGAGGCCTCCGAGGAGAGCGCCCTCAACCACCTGCAGGGTGCCGGCGGCGCCGAGCCCCGCGGCCCCC
GGGCGGAGAAGGCCGACGAGAAGGCGCAGGAGATGGCGAAGATGGCCGAGATGCTGGTGCAGCTCGTGCG
GCGGATAGAGAAGAGCGAGTCTTCGTGA

Translation (125 aa):
MRPLDAVELAEPEEVEVLEPEEDFEQFLLPVIHEMREDIASLTRERGRAPARNRGKLWEMDNMLIQIKTQ
VEASEESALNHLQGAGGAEPRGPRAEKADEKAQEMAKMAEMLVQLVRRIEKSESS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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