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Report for CCDS18681.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18681.1 Public Mus musculus 4 Tmem54 23 108 98 CCDS HistoryNCBI Gene:66260Re-query CCDS DB by CCDS ID:18681.1Re-query CCDS DB by GeneID:66260See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18681.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000106064.9 ENSMUSP00000101679.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106064.9Link to Ensembl Protein Viewer:ENSMUSP00000101679.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000106064Re-query CCDS DB by Protein ID:ENSMUSP00000101679
Original member Current member NCBI NM_025452.4 NP_079728.2 Accepted alive Link to Nucleotide Sequence:NM_025452.4Link to Protein Sequence:NP_079728.2Re-query CCDS DB by Nucleotide ID:NM_025452Re-query CCDS DB by Protein ID:NP_079728Link to BLAST:NP_079728.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079728.2 219 Q9D7S1 219 100% 0 0

Chromosomal Locations for CCDS 18681.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 129105716 129105731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 129108211 129108404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 129110375 129110434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 129110530 129110718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 129110813 129110947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 129111323 129111388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (660 nt):
ATGTGTCTGCGCATAGGTAGCCTGAATGTGGATGAGTTCCGGAAGGTGCTGATGAAGACGGGTCTGGTGC
TGGTTGTGCTGGGTCACGTGAGCTTCATTGCAGCCGCCGTGCTCCATGGTACCATGCTTCGCTTCGTAGC
CACCACCAGTGACGCTGTGGTTCTACAGTACTGCGCAGTGGACATCCTCTCTGTCACCTCTGCCATTGTG
GTCATTGTTGCAGGAATTTCGACCATCGTCTTGTCACGCTACCTCCCCAGCACCCCCTTGCGCTGGACCG
TGTTTAGCTTGAGTGTGGCCTGTGCTCTTCTCTCTCTGACCTGTGCCCTTGGACTCCTGGCCTCCATTGC
AGTGACCTTCGCCACCAAGGGTAGAGCACTATTGGCGGCCTGTACTTTTGAGAACCCTGAACTCCCAACA
CTGGCACCTGACTGTCCTTTTGACCCTACTCGAATTTATAGCTCTAGCCTGTGCCTCTGGGCCATCTCTC
TCATATTCTGTCTGGCGGAGAGTATGTCTGCCGTGCGCTGCGCCCAGCTCATGCATGGACTACTGGAACT
AAGGCCCTGGTGGGGGAAGAGCTGCCACCACACGATACAAGCAAGCCCAGAGCCCCTGGATGCTCATGAC
CTATTGAGCTGCGCCAGTTCTTGCAGCTGA

Translation (219 aa):
MCLRIGSLNVDEFRKVLMKTGLVLVVLGHVSFIAAAVLHGTMLRFVATTSDAVVLQYCAVDILSVTSAIV
VIVAGISTIVLSRYLPSTPLRWTVFSLSVACALLSLTCALGLLASIAVTFATKGRALLAACTFENPELPT
LAPDCPFDPTRIYSSSLCLWAISLIFCLAESMSAVRCAQLMHGLLELRPWWGKSCHHTIQASPEPLDAHD
LLSCASSCS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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