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Report for CCDS18236.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18236.1 Public Mus musculus 4 Slc31a2 23 108 98 CCDS HistoryNCBI Gene:20530Re-query CCDS DB by CCDS ID:18236.1Re-query CCDS DB by GeneID:20530See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18236.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000084530.8 ENSMUSP00000081578.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000084530.8Link to Ensembl Protein Viewer:ENSMUSP00000081578.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000084530Re-query CCDS DB by Protein ID:ENSMUSP00000081578
Original member Current member NCBI NM_025286.3 NP_079562.1 Accepted alive Link to Nucleotide Sequence:NM_025286.3Link to Protein Sequence:NP_079562.1Re-query CCDS DB by Nucleotide ID:NM_025286Re-query CCDS DB by Protein ID:NP_079562Link to BLAST:NP_079562.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079562.1 143 Q9CPU9 143 100% 0 0

Chromosomal Locations for CCDS 18236.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 62286569 62286574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 62292632 62292698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 62295887 62296076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 62296975 62297143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (432 nt):
ATGCCGATGCATTTCATCTTCTCAGATGAGGCCGTGCTTCTCTTTGATTTCTGGAGGGTCCACAGCCCTA
CAGGCATGGCTCTCTCAGTGCTGGTAGTCTTGCTCCTGGCAGTACTGTATGAGGGCATCAAGGTTGGCAA
AGCCAAATTGCTCCACAAGACTCTGGAGAGCCTGCCTGCCACCAACAGCCAGCAGTTCATCTTGGGACCA
GACCAGGATTCTACAGGCTCCAGATCAACTTCAGACAATAGGACCCGCCTCAGGTGGTTTTTGTGTTACT
TTGGCCAGTCCCTAGTCCATGTCATTCAGGTGGTAATTGGCTACTTTGTGATGCTGGCTGTCATGTCCTA
CAACACCTGGATTTTCCTCGGTGTGGTCCTGGGCTCGGCTGTGGGCTACTACCTAGCCTACCCACTTCTC
AACATGACTTAG

Translation (143 aa):
MPMHFIFSDEAVLLFDFWRVHSPTGMALSVLVVLLLAVLYEGIKVGKAKLLHKTLESLPATNSQQFILGP
DQDSTGSRSTSDNRTRLRWFLCYFGQSLVHVIQVVIGYFVMLAVMSYNTWIFLGVVLGSAVGYYLAYPLL
NMT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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