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Report for CCDS30386.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30386.1 Public Mus musculus X Tnmd 23 108 98 CCDS HistoryNCBI Gene:64103Re-query CCDS DB by CCDS ID:30386.1Re-query CCDS DB by GeneID:64103See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 30386.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033602.8 ENSMUSP00000033602.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033602.8Link to Ensembl Protein Viewer:ENSMUSP00000033602.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000033602Re-query CCDS DB by Protein ID:ENSMUSP00000033602
Original member Current member NCBI NM_022322.2 NP_071717.1 Accepted alive Link to Nucleotide Sequence:NM_022322.2Link to Protein Sequence:NP_071717.1Re-query CCDS DB by Nucleotide ID:NM_022322Re-query CCDS DB by Protein ID:NP_071717Link to BLAST:NP_071717.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_071717.1 317 Q9EP64 317 100% 0 0

Chromosomal Locations for CCDS 30386.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 133851207 133851254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 133851422 133851553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 133859723 133859863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 133860081 133860182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 133862862 133863015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 133864724 133864890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 133865196 133865405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (954 nt):
ATGGCAAAGAATCCTCCAGAGAACTGTGAGGGCTGTCACATTCTAAATGCAGAAGCTCTGAAATCTAAGA
AGATATGTAAATCACTGAAGATTTGTGGACTAGTGTTTGGTATCCTGGCCTTAACTCTAATTGTCCTGTT
TTGGGGGAGCAAACACTTCTGGCCCGAGGTATCCAAGAAAACCTATGACATGGAGCACACTTTCTACAGC
AACGGCGAGAAGAAGAAGATTTACATGGAAATTGATCCCATAACCAGAACAGAAATATTCAGAAGTGGAA
ATGGCACTGATGAAACATTGGAAGTCCATGACTTTAAAAATGGATACACTGGCATCTACTTTGTAGGTCT
TCAAAAATGCTTTATTAAAACTCAAATCAAAGTGATTCCTGAATTTTCTGAACCAGAGGAAGAAATAGAT
GAGAATGAAGAAATTACTACAACTTTCTTTGAACAGTCAGTGATTTGGGTTCCCGCAGAAAAGCCTATTG
AAAACAGAGACTTCCTGAAAAATTCTAAAATTCTGGAGATTTGCGATAATGTGACCATGTACTGGATCAA
TCCCACTCTAATAGCAGTTTCAGAATTACAGGACTTTGAGGAGGACGGTGAAGATCTTCACTTTCCTACC
AGTGAAAAAAAGGGGATTGACCAGAATGAGCAATGGGTGGTCCCGCAAGTGAAGGTGGAGAAGACCCGCC
ACACCAGACAAGCAAGCGAGGAAGACCTTCCTATAAATGACTATACTGAAAATGGAATTGAATTTGACCC
AATGCTGGATGAGAGAGGTTACTGTTGTATTTACTGTCGTCGAGGCAACCGTTACTGCCGCCGTGTCTGT
GAACCTTTACTAGGCTACTACCCATACCCCTACTGCTACCAAGGAGGTCGAGTCATCTGTCGTGTCATCA
TGCCTTGCAACTGGTGGGTGGCCCGCATGCTTGGGAGAGTCTAA

Translation (317 aa):
MAKNPPENCEGCHILNAEALKSKKICKSLKICGLVFGILALTLIVLFWGSKHFWPEVSKKTYDMEHTFYS
NGEKKKIYMEIDPITRTEIFRSGNGTDETLEVHDFKNGYTGIYFVGLQKCFIKTQIKVIPEFSEPEEEID
ENEEITTTFFEQSVIWVPAEKPIENRDFLKNSKILEICDNVTMYWINPTLIAVSELQDFEEDGEDLHFPT
SEKKGIDQNEQWVVPQVKVEKTRHTRQASEEDLPINDYTENGIEFDPMLDERGYCCIYCRRGNRYCRRVC
EPLLGYYPYPYCYQGGRVICRVIMPCNWWVARMLGRV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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