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Report for CCDS16405.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16405.1 Public Mus musculus 2 Or4c3d 23 108 98 CCDS HistoryNCBI Gene:57272Re-query CCDS DB by CCDS ID:16405.1Re-query CCDS DB by GeneID:57272See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 16405.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000099757.1 ENSMUSP00000097346.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000099757.1Link to Ensembl Protein Viewer:ENSMUSP00000097346.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000099757Re-query CCDS DB by Protein ID:ENSMUSP00000097346
Original member Current member EBI ENSMUST00000111506.2 ENSMUSP00000107131.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111506.2Link to Ensembl Protein Viewer:ENSMUSP00000107131.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000111506Re-query CCDS DB by Protein ID:ENSMUSP00000107131
Original member Current member EBI ENSMUST00000216475.1 ENSMUSP00000150438.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000216475.1Link to Ensembl Protein Viewer:ENSMUSP00000150438.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000216475Re-query CCDS DB by Protein ID:ENSMUSP00000150438
Original member Current member NCBI NM_020515.1 NP_065261.1 Accepted alive Link to Nucleotide Sequence:NM_020515.1Link to Protein Sequence:NP_065261.1Re-query CCDS DB by Nucleotide ID:NM_020515Re-query CCDS DB by Protein ID:NP_065261Link to BLAST:NP_065261.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_065261.1 302 Q60878 302 100% 0 0

Chromosomal Locations for CCDS 16405.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 90051414 90052322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (909 nt):
ATGGATAGTCCACGCAATGTCACAGAATTTTTCATGCTGGGTCTCTCCCAGAACCCCCAGGTGCAGAGGA
TG
TTGTTTGGGCTTTTTCTGCTGGTCTTCCTGGTCTCTGTTGGGGGCAACATGCTCATCATTATCACGAT
T
ACCTTCAGCCCCACCCTAGGTTCTCCTATGTACTTTTTCCTCTCATATCTTTCCTTTATTGATACTTGC
TAT
TCCTCTTGTATGACACCCAAACTCATCGCTGACTCCCTGCATGAGGGAAGAGCCATCTCTTTTGAGG
GC
TGCTTGGCCCAGTTCTTTGTGGCTCATTTATTGGGAGGAACTGAGATCATTCTGCTCACAGTGATGGC
C
TATGACCGCTATGTGGCCATCTGCAAGCCCCTACACTATACCACCACCATGACCAGGCATGTCTGTATT
GTG
CTGGTGGCAGTGGCTTGGCTGGGTGGCATCCTGCATTCAACAGCTCAGCTCTTTCTGGTCCTTCAGT
TG
CCCTTCTGTGGTCCCAATGTGATAAACCACTTTGTGTGTGACTTGTATCCTTTACTGGAGCTGGCCTG
C
ACTGACACATATGTCATTGGCCTGCTGGTGGTGGCCAACAGTGGTGTGATTTGCCTGTTGAACTTCCTC
ATG
CTGGCTGCCTCGTACATTGTCATCCTGCGCACTTTGAGGTCCCACAGTGCAGAGGGAAGACGGAAAG
CT
CTGTCTACCTGTGGAGCCCACTTCACTGTTGTTGCTTTGTTCTTTGTGCCCTGTATATTTATTTACAT
G
AGACCATCATCTACTCTGTCCATAGACAAAATAGTAGCTGTGTTTTATTGTATTTTGACACCCATGTTC
AAC
CCCCTGATTTATACTCTGAGAAATGCAGAGGTGAAAAATGCCATGAAGAATCTCTGGAGAAAATGA


Translation (302 aa):
MDSPRNVTEFFMLGLSQNPQVQRMLFGLFLLVFLVSVGGNMLIIITITFSPTLGSPMYFFLSYLSFIDTC
Y
SSCMTPKLIADSLHEGRAISFEGCLAQFFVAHLLGGTEIILLTVMAYDRYVAICKPLHYTTTMTRHVCI
V
LVAVAWLGGILHSTAQLFLVLQLPFCGPNVINHFVCDLYPLLELACTDTYVIGLLVVANSGVICLLNFL
M
LAASYIVILRTLRSHSAEGRRKALSTCGAHFTVVALFFVPCIFIYMRPSSTLSIDKIVAVFYCILTPMF
N
PLIYTLRNAEVKNAMKNLWRK




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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