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Report for CCDS18115.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18115.1 Public Mus musculus 4 Or13c7 23 108 98 CCDS HistoryNCBI Gene:29845Re-query CCDS DB by CCDS ID:18115.1Re-query CCDS DB by GeneID:29845See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 18115.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000095108.1 ENSMUSP00000092726.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000095108.1Link to Ensembl Protein Viewer:ENSMUSP00000092726.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000095108Re-query CCDS DB by Protein ID:ENSMUSP00000092726
Original member Current member EBI ENSMUST00000107860.2 ENSMUSP00000103492.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107860.2Link to Ensembl Protein Viewer:ENSMUSP00000103492.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000107860Re-query CCDS DB by Protein ID:ENSMUSP00000103492
Original member Current member NCBI NM_019473.1 NP_062346.1 Accepted alive Link to Nucleotide Sequence:NM_019473.1Link to Protein Sequence:NP_062346.1Re-query CCDS DB by Nucleotide ID:NM_019473Re-query CCDS DB by Protein ID:NP_062346Link to BLAST:NP_062346.1

Chromosomal Locations for CCDS 18115.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 43854311 43855270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (960 nt):
ATGGACAGATCCAATGAGACCGCCCCCCTGTCCGGCTTCATTCTCCTGGGCCTCTCTGCCCACCCAAAGC
TGGAGAAAACCTTCTTCGTGCTCATCCTGATGATGTACCTGGTGATCCTGCTGGGCAACGGCGTCCTCAT
CCTGGTGAGCATCCTCGACTCCCACCTGCACACGCCCATGTACTTCTTCCTGGGGAACCTCTCCTTCCTG
GACATCTGCTACACTACCTCCTCTGTCCCCCTCATTCTGGACAGCTTTCTGACTCCCAGGAAGACCATCT
CCTTCTCGGGCTGTGCCGTGCAGATGTTTCTCTCCTTCGCCATGGGAGCCACGGAGTGTGTGCTCCTGAG
TATGATGGCGTTTGATCGTTATGTGGCCATCTGCAACCCCCTTAGATATCCTGTGGTCATGAACAAGGCT
GCCTATGTGCCCATGGCTGCCAGTTCCTGGGCAGGTGGTATCACTAATTCTGTAGTGCAGACATCTTTGG
CAATGCGGCTGCCCTTCTGTGGGGACAATGTCATCAATCACTTCACCTGTGAGATCCTGGCAGTCCTGAA
ACTGGCCTGTGCTGACATCTCCATCAATGTCATCAGCATGGTTGTGGCCAACATGATCTTCTTGGCAGTC
CCAGTCCTCTTCATCTTTGTCTCCTATGTCTTCATCCTTGTGACAATCCTGAGGATCCCCTCTGCTGAGG
GGAGGAAGAAGGCCTTCTCCACCTGCTCTGCCCACCTCACCGTGGTACTTGTCTTCTATGGAACCATCCT
CTTCATGTACGGGAAGCCCAAGTCCAAGGACCCACTGGGGGCAGACAAGCAGGACCTTGCAGACAAGCTC
ATCTCCCTCTTCTATGGAGTGGTGACCCCCATGCTAAACCCCATCATCTACAGCTTGAGAAACAAGGACG
TGAGGGCTGCTGTGAGGAACCTGGTGGGCCAGAAACACCTAACTGAGTGA

Translation (319 aa):
MDRSNETAPLSGFILLGLSAHPKLEKTFFVLILMMYLVILLGNGVLILVSILDSHLHTPMYFFLGNLSFL
DICYTTSSVPLILDSFLTPRKTISFSGCAVQMFLSFAMGATECVLLSMMAFDRYVAICNPLRYPVVMNKA
AYVPMAASSWAGGITNSVVQTSLAMRLPFCGDNVINHFTCEILAVLKLACADISINVISMVVANMIFLAV
PVLFIFVSYVFILVTILRIPSAEGRKKAFSTCSAHLTVVLVFYGTILFMYGKPKSKDPLGADKQDLADKL
ISLFYGVVTPMLNPIIYSLRNKDVRAAVRNLVGQKHLTE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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