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Report for CCDS51498.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51498.1 Public Mus musculus 5 Ncapg 23 108 98 CCDS HistoryNCBI Gene:54392Re-query CCDS DB by CCDS ID:51498.1Re-query CCDS DB by GeneID:54392See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51498.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000117396.2 ENSMUSP00000112871.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000117396.2Link to Ensembl Protein Viewer:ENSMUSP00000112871.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000117396Re-query CCDS DB by Protein ID:ENSMUSP00000112871
Original member NCBI NM_019438.1 NP_062311.1 Updated not alive Link to Nucleotide Sequence:NM_019438.1Link to Protein Sequence:NP_062311.1Re-query CCDS DB by Nucleotide ID:NM_019438Re-query CCDS DB by Protein ID:NP_062311
Current member NCBI NM_019438.2 NP_062311.1 Accepted alive Link to Nucleotide Sequence:NM_019438.2Link to Protein Sequence:NP_062311.1Re-query CCDS DB by Nucleotide ID:NM_019438Re-query CCDS DB by Protein ID:NP_062311Link to BLAST:NP_062311.1

Chromosomal Locations for CCDS 51498.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 45670023 45670133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 45671020 45671223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 45672273 45672501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 45674358 45674503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 45674769 45674853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 45675949 45676141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 45676592 45676741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 45678347 45678487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 45679848 45679971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 45681372 45681455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 45681727 45681906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 45687312 45687422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 45688561 45688680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 45691602 45691826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 45693157 45693338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 45693752 45693926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 45695654 45695815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 45696033 45696168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 45696473 45696544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 45698841 45698910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 45699848 45699962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3015 nt):
ATGGCAGCGCAGAAGAAGCGGCTTTCTGTGAAGGAGGCGTTTCAGCTGGCGCAGCAGCCGCACCAGAACC
AGGCGAAGCTGGTGGTGGCGCTGAGCCGCACGTACGGCGCGATGGATGATAAAACAGCTTTTCAGGAGGA
GTTTATTCATTACCTTAAGTATGCTATGGTGGTATATAAGCGTGAACCTGCCGTGGAGAGGGTCATGGAC
TTCACAGCCAAGTTTGTTACTTCATTTCACCAGTCTGATGAGGAAGAAGAGGAGGAAGAGAACGATGGTG
GCATTTTAAATTATTTGTTTACTTTTCTCTTACAGTCTCATGAAGCAAACAGCAGTGCAGTCAGATTTAG
AGTGTGCCAGCTCACTAATAAACTACTTGGGAATATGCCAGAAAATGCCCAAATTGATGATGACTTATTT
GATAAGATTAATGAAGCCATGCTAATTAGATTGAAAGATAAGATTCCAAATGTAAGAATACAAGCAGTTT
TGGCTCTTTCTCGACTCCAAGATCCCAAGGACGATGATTGCCCAGTAGTTGATGCATATGTTAATGTGAT
TGAAAATGATTCAAATCCAGAAGTTAGACGTGCAGTGTTATCTTGTATTGCACCATCAGCAAAGACTTTG
TCAAAAATTGTAGGACGTACAAAGGATATAAAGGATACTGTCAGAAAGCTGGCTTATCAGGTGTTAGCTG
AAAAAGTTCATATGAGAGCTATGTCTATTGCTCAGAGAGTGCTGCTGCTTCAACAAGGTCTTAATGACAG
ATCAGATGCTGTGAAACAAGCAGTGCAGAAGCATCTTCTCCAAGGCTGGTTGCGTTTCACTGAAGGGAAT
ATTCTAGAGTTTCTTCATCGGTTGGATGTGGAAAATTCTTCTGATGTAGCAGTCTCCGTTCTCCATTCCT
TATTCTCAATGACTCCTCTCAGTGAGCTGGTGGGAATTTGTAAAAATGATGATGGCAGGAAGTTGATTCC
AGTGGAAACATTAACTCCTGAAATTGCTCTGTACTGGTGCACCCTTTGTGAATATTTGAGATCAAAGGGA
GATGAAGGTGAAGAGTTTTTAGAGCAGATTTTGCCAGAGCCTGCAGTATATGCTGAGTACTTACTGAGTT
ACATTCAGGGCTTCCCAGTAGTTAATGAAGAGCAGAAAGGTGATTTTACCTTCATTGGAGATTTGATGAA
AAGAGAATTCATAGGTCAGCAATTAATTCTAATTATGAAATCTTTGGACACTAGTGAAGAAGGAGGAAGG
AAACGACTGCTGGCTATTTTGCAAGAGACTCTTATTCTGCCTACAACCCCAATATCCTTAGTTTCTTTAA
TTGTTGAGAGACTCCTCCACATCATCAGAGATGATAATGAAAGGATACAGATTGTCACAGAAATTATCTC
AGAGATTCGTGCACCCATTGTTAATGTTGTTGTTGATCCATCTGATACAAGAAAGAAAGAACTCAAGATG
GCTGAAATAAAAGTTAAACTTATTGAGGCTAAAGAAGCTTTGGAAAATTGCATTGCTGTACAAGATTTTG
ATCAGGCATCAAAATTAAAAGAAGAAATAAAAATATTGGAAGATGCCAAAATAAACCTGCTAAAAGAGAC
TGAGCAACTTGAAATTAAAGAAGTCCACACAGAAAAGAACGATGCGGAAACATTACAGAAGTGTCTTGTT
TTGTGTTACGAATTGTTGAAACAGATGTCCACTTCAACTGGAATCACTGCAACCATGAATGGGATCATTG
AATCTTTGATTCTTCCTGGAATAATAAGTGTTCATCCTATAGTAAGAAACTTGGCTGTTTTGTGTTTGGG
ATGCTGTGGACTACAGAATCGGGATTTTGCCAGTAAACACTTTATGCTGTTCTTACAGGTTTTGCAAATC
GATGATGTCACAATAAAAATAAGTGCTCTAAAGGCAATCATTGACCAATTGATGATGTTTGGAATTGAGC
CATTTAAAACCCAGAAAGTTAAGGGCGTTCAATGTGAAGGTGAAGAAATAAACTGTCATGATAAGCAAGA
AGAAAATGATGCTGGAGAGACTGACCCAGCTAAGAGTGTTCTGAAACTCCTCTCCGACTTCTTAGACAGC
GAGGTATCTGAACTCAGGACAGGAGCTGCAGAAGGACTAGCCAAGCTGATGTTTTCTGGGCTTTTGGTCA
GCAGCAGGATTCTTTCTCGTCTTATTTTGTTATGGTATAATCCTGTGACTGAAGAGGATGTTCGACTTCG
ACATTGCCTAGGAGTGTTTTTCCCCATGTTTGCTTATGCAAACAGGACTAATCAGGAGTGCTTTGAAGAA
GCCTTTATTCCAACTGTGCAAACACTGGCCAATGCCCCAGTGTCATCTCCTTTAGCTGAAGTAGATGTCA
CAAATGTTGTTGAATTGCTTGTTGATCTGACAAGACCAAGTAGATTAAATCCTAAGGCAAAGAATTCTCA
GGATTATCAGGCCTTAACAGTACATGACAACTTGGCTATAAAAATTTGCAATGAGATCTTAACAAGTCCA
TGCTCACCAGAAAATCGGGTTTATACAAAAGCTTTGAGTTTGGTCGAACTCAGTAGCAATGTTACAAAAG
ATCTCCTGCTTCTATTGGATGAGATTCTGGAGCATGTAACAGATAGGACGTGTCTGAGAGCCTTGGAGAA
GATTAAGAGTCAGTTAGGAAAGGGAGGTAAAGAATCTGACCCAGGTGTAGTAACACAGGATGTCAACACA
ACCACAGCAGTTCTTCAAAATGAAAACGAATATATGACTCCTGTGAGGGATGGAAAAGGAACTCAAACAT
CAAAATCTACACAAGGAAAATCTAAAAGAGGATGTAGAAAAGCGCCAGTTTCATCTAAGACCAACAGGAG
ACGCCAGATTGCTGGGCCAGACTCTGAAAGTGATCATGAACCACCATCAGAAATGAAGATGAGATTACCC
AGACGAGCCAAAACAGCTGCGCTACAGAAAAGTAAACTTAACCTTGCAGAGTTCCTTAATGAAGATACAA
GTTAA

Translation (1004 aa):
MAAQKKRLSVKEAFQLAQQPHQNQAKLVVALSRTYGAMDDKTAFQEEFIHYLKYAMVVYKREPAVERVMD
FTAKFVTSFHQSDEEEEEEENDGGILNYLFTFLLQSHEANSSAVRFRVCQLTNKLLGNMPENAQIDDDLF
DKINEAMLIRLKDKIPNVRIQAVLALSRLQDPKDDDCPVVDAYVNVIENDSNPEVRRAVLSCIAPSAKTL
SKIVGRTKDIKDTVRKLAYQVLAEKVHMRAMSIAQRVLLLQQGLNDRSDAVKQAVQKHLLQGWLRFTEGN
ILEFLHRLDVENSSDVAVSVLHSLFSMTPLSELVGICKNDDGRKLIPVETLTPEIALYWCTLCEYLRSKG
DEGEEFLEQILPEPAVYAEYLLSYIQGFPVVNEEQKGDFTFIGDLMKREFIGQQLILIMKSLDTSEEGGR
KRLLAILQETLILPTTPISLVSLIVERLLHIIRDDNERIQIVTEIISEIRAPIVNVVVDPSDTRKKELKM
AEIKVKLIEAKEALENCIAVQDFDQASKLKEEIKILEDAKINLLKETEQLEIKEVHTEKNDAETLQKCLV
LCYELLKQMSTSTGITATMNGIIESLILPGIISVHPIVRNLAVLCLGCCGLQNRDFASKHFMLFLQVLQI
DDVTIKISALKAIIDQLMMFGIEPFKTQKVKGVQCEGEEINCHDKQEENDAGETDPAKSVLKLLSDFLDS
EVSELRTGAAEGLAKLMFSGLLVSSRILSRLILLWYNPVTEEDVRLRHCLGVFFPMFAYANRTNQECFEE
AFIPTVQTLANAPVSSPLAEVDVTNVVELLVDLTRPSRLNPKAKNSQDYQALTVHDNLAIKICNEILTSP
CSPENRVYTKALSLVELSSNVTKDLLLLLDEILEHVTDRTCLRALEKIKSQLGKGGKESDPGVVTQDVNT
TTAVLQNENEYMTPVRDGKGTQTSKSTQGKSKRGCRKAPVSSKTNRRRQIAGPDSESDHEPPSEMKMRLP
RRAKTAALQKSKLNLAEFLNEDTS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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