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Report for CCDS10564.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10564.1 Public Homo sapiens 16 NDE1 24 110 108 CCDS HistoryNCBI Gene:54820Re-query CCDS DB by CCDS ID:10564.1Re-query CCDS DB by GeneID:54820See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10564.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000396354.6 ENSP00000379642.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000396354.6Link to Ensembl Protein Viewer:ENSP00000379642.1Re-query CCDS DB by Nucleotide ID:ENST00000396354Re-query CCDS DB by Protein ID:ENSP00000379642
Original member Current member EBI ENST00000396355.5 ENSP00000379643.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000396355.5Link to Ensembl Protein Viewer:ENSP00000379643.1Re-query CCDS DB by Nucleotide ID:ENST00000396355Re-query CCDS DB by Protein ID:ENSP00000379643
Original member Current member EBI ENST00000674888.1 ENSP00000501936.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000674888.1Link to Ensembl Protein Viewer:ENSP00000501936.1Re-query CCDS DB by Nucleotide ID:ENST00000674888Re-query CCDS DB by Protein ID:ENSP00000501936
Original member Current member EBI ENST00000675951.1 ENSP00000502160.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000675951.1Link to Ensembl Protein Viewer:ENSP00000502160.1Re-query CCDS DB by Nucleotide ID:ENST00000675951Re-query CCDS DB by Protein ID:ENSP00000502160
Original member Current member EBI ENST00000675926.1 ENSP00000502354.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000675926.1Link to Ensembl Protein Viewer:ENSP00000502354.1Re-query CCDS DB by Nucleotide ID:ENST00000675926Re-query CCDS DB by Protein ID:ENSP00000502354
Original member Current member EBI ENST00000674554.1 ENSP00000502635.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000674554.1Link to Ensembl Protein Viewer:ENSP00000502635.1Re-query CCDS DB by Nucleotide ID:ENST00000674554Re-query CCDS DB by Protein ID:ENSP00000502635
Original member Current member NCBI NM_001143979.2 NP_001137451.1 Accepted alive Link to Nucleotide Sequence:NM_001143979.2Link to Protein Sequence:NP_001137451.1Re-query CCDS DB by Nucleotide ID:NM_001143979Re-query CCDS DB by Protein ID:NP_001137451Link to BLAST:NP_001137451.1
Original member Current member NCBI NM_017668.3 NP_060138.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_017668.3Link to Protein Sequence:NP_060138.1Re-query CCDS DB by Nucleotide ID:NM_017668Re-query CCDS DB by Protein ID:NP_060138Link to BLAST:NP_060138.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001137451.1 335 Q9NXR1-2 335 100% 0 0
NP_060138.1 335 Q9NXR1-2 335 100% 0 0

Chromosomal Locations for CCDS 10564.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 15664779 15664861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 15667286 15667439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 15677801 15677949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 15687375 15687511 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 15691144 15691323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 15694165 15694256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 15696709 15696860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 15724191 15724251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1008 nt):
ATGGAGGACTCCGGAAAGACTTTCAGCTCCGAGGAGGAAGAAGCTAACTATTGGAAAGATCTGGCGATGA
CCTACAAACAGAGGGCAGAAAATACGCAAGAGGAACTCCGAGAATTCCAGGAGGGAAGCCGAGAATATGA
AGCTGAATTGGAGACGCAGCTGCAACAAATTGAAACCAGGAACAGAGACCTCCTGTCCGAAAATAACCGC
CTTCGCATGGAGCTGGAAACCATCAAGGAGAAGTTTGAAGTGCAGCACTCTGAAGGCTACCGGCAGATCT
CAGCCTTGGAGGATGACCTCGCGCAGACCAAAGCCATTAAAGACCAATTGCAGAAATACATCAGAGAGCT
GGAGCAAGCAAATGACGACCTGGAAAGAGCCAAGCGCGCCACGATCATGTCTCTCGAAGACTTTGAGCAG
CGCTTGAATCAGGCCATCGAAAGAAATGCCTTCCTGGAAAGTGAACTTGATGAAAAAGAGAATCTCCTGG
AATCTGTTCAGAGACTGAAGGATGAAGCCAGAGATTTGCGGCAGGAACTGGCCGTGCAGCAGAAGCAGGA
GAAACCCAGGACCCCCATGCCCAGCTCAGTGGAAGCTGAGAGGACAGACACAGCTGTGCAGGCCACGGGC
TCCGTGCCGTCCACGCCCATTGCTCACCGAGGACCCAGCTCAAGTTTAAACACACCTGGGAGCTTCAGAC
GTGGCCTGGACGACTCCACCGGGGGGACCCCCCTCACACCTGCGGCCCGGATATCAGCCCTCAACATTGT
GGGAGACCTACTGCGGAAAGTCGGGGCACTGGAGTCCAAACTCGCTTCCTGCCGGAACCTCGTGTACGAT
CAGTCCCCAAACCGAACAGGTGGCCCAGCCTCTGGGCGGAGCAGCAAGAACAGAGATGGCGGGGAGAGAC
GGCCAAGCAGCACCAGCGTGCCTTTGGGTGATAAGGGGTTGGACACGAGTTGCCGCTGGTTGTCCAAATC
AACAACCAGGTCGTCCAGCTCCTGCTGA

Translation (335 aa):
MEDSGKTFSSEEEEANYWKDLAMTYKQRAENTQEELREFQEGSREYEAELETQLQQIETRNRDLLSENNR
LRMELETIKEKFEVQHSEGYRQISALEDDLAQTKAIKDQLQKYIRELEQANDDLERAKRATIMSLEDFEQ
RLNQAIERNAFLESELDEKENLLESVQRLKDEARDLRQELAVQQKQEKPRTPMPSSVEAERTDTAVQATG
SVPSTPIAHRGPSSSLNTPGSFRRGLDDSTGGTPLTPAARISALNIVGDLLRKVGALESKLASCRNLVYD
QSPNRTGGPASGRSSKNRDGGERRPSSTSVPLGDKGLDTSCRWLSKSTTRSSSSC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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