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Report for CCDS2028.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2028.1 Public Homo sapiens 2 ANKRD39 24 110 108 CCDS HistoryNCBI Gene:51239Re-query CCDS DB by CCDS ID:2028.1Re-query CCDS DB by GeneID:51239See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2028.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000393537.5 ENSP00000377170.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000393537.5Link to Ensembl Protein Viewer:ENSP00000377170.4Re-query CCDS DB by Nucleotide ID:ENST00000393537Re-query CCDS DB by Protein ID:ENSP00000377170
Original member Current member EBI ENST00000443120.5 ENSP00000398321.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000443120.5Link to Ensembl Protein Viewer:ENSP00000398321.1Re-query CCDS DB by Nucleotide ID:ENST00000443120Re-query CCDS DB by Protein ID:ENSP00000398321
Original member Current member NCBI NM_016466.6 NP_057550.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_016466.6Link to Protein Sequence:NP_057550.3Re-query CCDS DB by Nucleotide ID:NM_016466Re-query CCDS DB by Protein ID:NP_057550Link to BLAST:NP_057550.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057550.3 183 Q53RE8 183 100% 0 0

Chromosomal Locations for CCDS 2028.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 96848301 96848444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 96853401 96853604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 96854338 96854441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 96857888 96857987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (552 nt):
ATGGCGACGCCTCGGCCCTGCGCGGACGGGCCCTGCTGCTCGCATCCCAGCGCGGTGCTCGGCGTACAGC
AGACGCTGGAGGAGATGGACTTCGAGAGGGGAATCTGGTCGGCAGCCCTGAATGGAGACCTGGGCCGAGT
GAAGCATTTAATCCAGAAGGCCGAGGACCCAAGTCAGCCCGACTCGGCCGGCTACACTGCGCTGCACTAT
GCCAGCCGCAATGGGCACTACGCTGTGTGCCAGTTCCTGCTGGAAAGCGGAGCTAAGTGTGATGCCCAGA
CCCACGGGGGTGCCACTGCTCTGCACCGAGCCAGCTACTGCGGGCACACTGAAATCGCGCGGCTCCTGCT
ATCACATGGGTCCAACCCCAGGGTGGTGGATGACGACGGCATGACCAGTCTGCATAAGGCTGCTGAGAGG
GGTCACGGGGACATCTGCTCCCTCCTCCTGCAACACAGCCCAGCCCTGAAGGCCATCCGGGACCGAAAGG
CACGGCTAGCATGTGACCTGCTGCCTTGCAACAGTGACCTGCGGGACCTGCTATCCAGCTGA

Translation (183 aa):
MATPRPCADGPCCSHPSAVLGVQQTLEEMDFERGIWSAALNGDLGRVKHLIQKAEDPSQPDSAGYTALHY
ASRNGHYAVCQFLLESGAKCDAQTHGGATALHRASYCGHTEIARLLLSHGSNPRVVDDDGMTSLHKAAER
GHGDICSLLLQHSPALKAIRDRKARLACDLLPCNSDLRDLLSS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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