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Report for CCDS15349.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15349.2 Public Mus musculus 1 Rgs1 23 108 98 CCDS HistoryNCBI Gene:50778Re-query CCDS DB by CCDS ID:15349.2Re-query CCDS DB by GeneID:50778See the combined annotation on chromosome 1 in Sequence Viewer

Public Note for CCDS 15349.1
The coding region has been updated to extend the N-terminus to one that is more supported by available transcript and protein data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 15349.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000189061.6 ENSMUSP00000140624.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000189061.6Link to Ensembl Protein Viewer:ENSMUSP00000140624.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000189061Re-query CCDS DB by Protein ID:ENSMUSP00000140624
Original member Current member NCBI NM_015811.2 NP_056626.2 Accepted alive Link to Nucleotide Sequence:NM_015811.2Link to Protein Sequence:NP_056626.2Re-query CCDS DB by Nucleotide ID:NM_015811Re-query CCDS DB by Protein ID:NP_056626Link to BLAST:NP_056626.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_056626.2 209 Q9JL25-1 209 100% 0 0

Chromosomal Locations for CCDS 15349.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 144245302 144245487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 144246190 144246353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 144247906 144247967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 144248479 144248559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 144248901 144249037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (630 nt):
ATGAGAGCGGCAGCCATCTCCATGCCAAGGTTGAACAAAATGCCAGGAATGTTCTTTTCTGCTAGCCCAA
AGGATTCGAAAGAACACAGCCATTCTCTTCTAGACGACAAAAAGCAGAAAAAAAGGCCAAAGACTTTTGG
AATGGACGTGAAAACATACCTGAGATCGATGATCCCACATCTGGAATCTGGGATGAAATCGGCCAAGTCC
AAAGACATACTTTCTGCTGAAGAAGTAATGCAGTGGTCTCAGTCTCTGGAAAAACTCCTTGCCAACCAGA
CAGGTCAAAATGTCTTTGGAAGATTTCTAAAGTCTGAATTCAGTGAGGAAAATATTGAATTCTGGTTGGC
TTGTGAGGACTATAAGAAAACAGAGACTGATCTTTTGCATAACAAAGCAGAGAATATATACAAAGCATTT
GTGCATTCAGATGCTGTGAAACAAATCAATATTGACTTCCATACTCGAGAATCGACAGCCAAGAAGATTA
AAACACCAACTCCCACATCTTTTGATGAAGCACAAAAAGTCATATATTCACTCATGGAAAAAGATTCTTA
TCCCAGGTTCCTGAAATCAAATATTTACTTAAATCTTCTAAATGACCTTCAGGCAAATACTTTAAAGTGA

Translation (209 aa):
MRAAAISMPRLNKMPGMFFSASPKDSKEHSHSLLDDKKQKKRPKTFGMDVKTYLRSMIPHLESGMKSAKS
KDILSAEEVMQWSQSLEKLLANQTGQNVFGRFLKSEFSEENIEFWLACEDYKKTETDLLHNKAENIYKAF
VHSDAVKQINIDFHTRESTAKKIKTPTPTSFDEAQKVIYSLMEKDSYPRFLKSNIYLNLLNDLQANTLK


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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