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Report for CCDS24890.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24890.1 Public Mus musculus 11 Kcnab3 23 108 98 CCDS HistoryNCBI Gene:16499Re-query CCDS DB by CCDS ID:24890.1Re-query CCDS DB by GeneID:16499See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24890.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000018614.2 ENSMUSP00000018614.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000018614.2Link to Ensembl Protein Viewer:ENSMUSP00000018614.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000018614Re-query CCDS DB by Protein ID:ENSMUSP00000018614
Original member Current member NCBI NM_010599.4 NP_034729.3 Accepted alive Link to Nucleotide Sequence:NM_010599.4Link to Protein Sequence:NP_034729.3Re-query CCDS DB by Nucleotide ID:NM_010599Re-query CCDS DB by Protein ID:NP_034729Link to BLAST:NP_034729.3

Chromosomal Locations for CCDS 24890.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 69326682 69326923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69328120 69328163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69328251 69328288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69328509 69328588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69329850 69329894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69329983 69330027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69330183 69330226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69330397 69330483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69330740 69330825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69331051 69331171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69331262 69331356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69331460 69331580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69331736 69331824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69332066 69332143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1215 nt):
ATGCAGGTGTCTATCGCGTGTACCGAGCAGAACCTTCGCAGCCGGAGCAGTGAGGACCGTCTCTGTGGAC
CCCGGCCCGGTCCTGGGGGCGGTAATGGAGGGCCAGTGGGCGGAGGGCATGGGAACCCTCCGGGGGGTGG
AGGACCGAGCTCGAAGTCACGAGCTGCAGTGGTCCCTAGACCCCCAGCACCTGCTGGGGCCCTTCGAGAG
AGCACCGGCCGAGGCACTGGCATGAAATACAGGAACCTAGGGAAGTCTGGGCTCCGGGTGTCCTGTCTTG
GCCTTGGTACCTGGGTCACGTTTGGCTCTCAGATCTCAGATGAGACAGCAGAAGATCTCCTGACAGTTGC
CTATGAGCACGGCGTAAACCTGTTTGACACTGCTGAAGTGTACGCGGCAGGAAAGGCTGAAAGAACCCTT
GGCAATATTCTCAAGAGCAAAGGCTGGAGGAGATCAAGCTATGTTATCACCACCAAGATTTTTTGGGGTG
GACAGGCAGAAACAGAGCGTGGCTTGAGTCGCAAACACATCATTGAAGGCTTGCAAGGATCCCTGGACCG
CCTCCAGCTGGAATACGTTGATATAGTATTTGCCAATCGTTCAGATCCTAATAGTCCTATGGAGGAGATT
GTGAGAGCCATGACCTATGTCATCAACCAGGGCCTGGCCCTATACTGGGGGACATCCAGATGGAGTGCTG
CAGAAATCATGGAGGCCTACTCCATGGCCAGACAGTTCAATCTGATCCCTCCTGTGTGCGAGCAAGCGGA
GAACCACTTCTTTCAGAGGGAGAAGGTGGAGATGCAGCTGCCTGAGCTCTACCACAAAATTGGTGTTGGC
TCAGTCACTTGGTCCCCCCTGGCGTGCGGCCTCATTACTAGCAAGTATGATGGGCGAGTTCCGGATACTT
GCAAAGCCACTGTCAAGGGCTACCAGTGGCTCAAAGAAAAAGTTCAGAGTGAGGAAGGCAAGAAGCAACA
AGCCAGAGTGATGGATCTTCTCCCAACTGCTCGCCAGCTAGGCTGCACCGTGGCCCAACTAGCTATAGCC
TGGTGTCTCCGAAGCGAGGGTGTCAGCTCTGTTTTACTGGGGGTGTCCAGTGCAGAGCAGCTGATGGAAC
ATCTGGGCTCCCTACAGGTGCTGAGTCAGCTGACGCCGCAAACGGTGGTGGAAATAGATGCGCTCTTGGG
GAACAAATCGCATTCCAAGAAGTAG

Translation (404 aa):
MQVSIACTEQNLRSRSSEDRLCGPRPGPGGGNGGPVGGGHGNPPGGGGPSSKSRAAVVPRPPAPAGALRE
STGRGTGMKYRNLGKSGLRVSCLGLGTWVTFGSQISDETAEDLLTVAYEHGVNLFDTAEVYAAGKAERTL
GNILKSKGWRRSSYVITTKIFWGGQAETERGLSRKHIIEGLQGSLDRLQLEYVDIVFANRSDPNSPMEEI
VRAMTYVINQGLALYWGTSRWSAAEIMEAYSMARQFNLIPPVCEQAENHFFQREKVEMQLPELYHKIGVG
SVTWSPLACGLITSKYDGRVPDTCKATVKGYQWLKEKVQSEEGKKQQARVMDLLPTARQLGCTVAQLAIA
WCLRSEGVSSVLLGVSSAEQLMEHLGSLQVLSQLTPQTVVEIDALLGNKSHSKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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