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Report for CCDS37683.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37683.1 Public Mus musculus 17 Tgif1 23 108 98 CCDS HistoryNCBI Gene:21815Re-query CCDS DB by CCDS ID:37683.1Re-query CCDS DB by GeneID:21815See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37683.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000059775.14 ENSMUSP00000060512.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000059775.14Link to Ensembl Protein Viewer:ENSMUSP00000060512.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000059775Re-query CCDS DB by Protein ID:ENSMUSP00000060512
Original member Current member NCBI NM_009372.3 NP_033398.2 Accepted alive Link to Nucleotide Sequence:NM_009372.3Link to Protein Sequence:NP_033398.2Re-query CCDS DB by Nucleotide ID:NM_009372Re-query CCDS DB by Protein ID:NP_033398Link to BLAST:NP_033398.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033398.2 272 P70284-1 272 100% 0 0

Chromosomal Locations for CCDS 37683.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 70844697 70845272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 70846172 70846398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 70850872 70850887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (819 nt):
ATGAAAAGCAAGAAGGGTCTTGTTGCAGCATCTGGCAGTGACTCTGAGGATGAAGACAGCATGGACAGTC
CCCTGGACCTTTCCTCATCAGCAGCCTCTGGCAAGAGAAGGAGGAGAGGCAATCTGCCCAAGGAGTCAGT
CCAGATTCTGCGAGACTGGCTGTATGAACACAGATACAACGCCTATCCCTCAGAGCAAGAGAAAGCACTG
CTGTCCCAGCAGACACACCTGTCCACACTACAGGTCTGTAACTGGTTCATCAACGCCCGCCGCAGGCTCC
TTCCTGACATGCTGAGAAAGGATGGCAAAGATCCAAATCAGTTCACGATTTCCCGCCGTGGGGCCAAGAT
TTCAGAAGCTAGCTCTATTGAAGCTGCAATGGGTATCAAAAACTTCATGCCAACTCTAGAAGAGAGCCCA
TTTCATTCCTGCGTAGTTGGACCCAACCCAACCCTAGGGAGACCAGTGTCTCCCAAACCTCCCTCCCCAG
GATCCATTTTGGCTCGCCCGTCAGTGATCTGCCATACCACTGTGACTGCATTGAAGGATGGGCCTTTCTC
TCTCTGTCAGCCGATTGGTGTGGGACAGAGTACAGATGTACCGCAAATAGCACCCAGCAACTTTACAGAC
ACCTCTCTCGTGTACCCAGAGGACACTTGCAAATCTGGACCCAGTCCAAACCCTCAGAGTGGTCTTTTCA
ACACTCCTCCCCCTACTCCACCAGACCTCAACCAGGATTTTAGTGGATTCCAGCTTCTAGTGGATGTTGC
ACTCAAACGAGCGGCAGAGATGGAGCTTCAGGCCAAACTCACAGCTTAA

Translation (272 aa):
MKSKKGLVAASGSDSEDEDSMDSPLDLSSSAASGKRRRRGNLPKESVQILRDWLYEHRYNAYPSEQEKAL
LSQQTHLSTLQVCNWFINARRRLLPDMLRKDGKDPNQFTISRRGAKISEASSIEAAMGIKNFMPTLEESP
FHSCVVGPNPTLGRPVSPKPPSPGSILARPSVICHTTVTALKDGPFSLCQPIGVGQSTDVPQIAPSNFTD
TSLVYPEDTCKSGPSPNPQSGLFNTPPPTPPDLNQDFSGFQLLVDVALKRAAEMELQAKLTA


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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